我已经编写了一个简单的MH算法来估计抛硬币落地头部的后验概率。我已经看过代码很多次了,但我不明白大都会算法为什么不能正常工作。
import numpy as np
import matplotlib.pyplot as plt
from scipy.stats import beta
import math
def nCr(n,r):
f = math.factorial
return f(n) / f(r) / f(n-r)
def log_likelihood(theta, trials, heads):
likelihood = nCr(trials, heads) * (theta**heads) * (1 - theta) ** (trials - heads)
return np.log(likelihood)
def log_prior(prior, theta):
return np.log(prior.pdf(theta))
def compute_acceptance_prob(theta_curr, theta_prop, trials, heads, prior):
log_likelihood_theta_curr = log_likelihood(theta_curr, trials, heads)
log_likelihood_theta_prop = log_likelihood(theta_prop, trials, heads)
log_prior_curr = log_prior(prior, theta_curr)
log_prior_prop = log_prior(prior, theta_prop)
log_post_curr = log_likelihood_theta_curr + log_prior_curr
log_post_prop = log_likelihood_theta_prop + log_prior_prop
return min(1,log_post_prop / log_post_curr)
def Metropolis_hastings(prior, a, b, trials, heads, MAX_ITERS = 100000):
thetas = []
theta_curr = beta.rvs(a,b)
for i in range(MAX_ITERS):
theta_prop = theta_curr + np.random.normal(0, 0.05)
#print(theta_prop)
if theta_prop > 1 or theta_prop < 0:
theta_prop = theta_curr
prob = compute_acceptance_prob(theta_curr, theta_prop, trials, heads, prior)
r = np.random.uniform(0,1)
if prob > r:
theta_curr = theta_prop
thetas.append(theta_curr)
return thetas
thetas = Metropolis_hastings(theta_1, 5, 6, 20, 10)当我在直方图上绘制thetas时,我得到了如下的后部形状...这肯定是不正确的。
plt.hist(thetas[20000:], histtype='stepfilled',
color = 'darkred', bins=30, alpha=0.8, density=True);

似乎尾部的样本在后部更有可能。但是为什么呢?
发布于 2020-09-13 15:51:55
艾维意识到我的错误了。我不应该取非正规化后验概率的对数。
https://stackoverflow.com/questions/63867346
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