我正在使用一个名为snakemake的python,它看起来如下所示:
from bx.intervals.cluster import ClusterTree
from epipp.config import system_prefix, include_prefix, config, expression_matrix
config["name"] = "correlate_chip_regions_and_rna_seq"
bin_sizes = {"H3K4me3": 1000, "PolII": 200, "H3K27me3": 200}
rule all:
input:
expand("data/{bin_size}_{modification}.bed", zip,
bin_size=bin_sizes.values(), modification=bin_sizes.keys())
rule get_gene_expression:
input:
expression_matrix
output:
"data/expression/series.csv"
run:
expression_matrix = pd.read_table(input[0])
expression_series = expression_matrix.sum(1).sort_values(ascending=False)
expression_series.to_csv(output[0], sep=" ")我想在run:块中运行yapf。
是否有可能让yapf忽略python中不存在的内容,比如rule关键字等等,而只在文件的特定部分使用它?
发布于 2022-01-07 03:31:51
是的,通过使用# yapf: disable和# yapf: enable注释指令,这是可能的。
来自自述文件的示例
# yapf: disable
FOO = {
# ... some very large, complex data literal.
}
BAR = [
# ... another large data literal.
]
# yapf: enable还可以禁用如下所示的单个文字的格式设置:
BAZ = {
(1, 2, 3, 4),
(5, 6, 7, 8),
(9, 10, 11, 12),
} # yapf: disablehttps://stackoverflow.com/questions/38261500
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