软件包安装具有非零退出状态

Question

我刚刚将R更新到了去年12月12日发布的版本3.6.2“黑暗与风暴之夜”。我尝试安装以下软件包，但收到了相同的错误，"installation of package X had -zero exit status“。

这些包包括: broom、tidyr、tidyselect、vctrs和rlang。

我检查了broom的文档，我没有看到任何说明它只被一些以前的版本明确支持的东西。作为背景，今天下午我使用了5.2.1版本，收到了类似的错误，并决定升级。

有没有可能问题出在我这边，mac OSX Catalina？我能做些什么来解决这个问题？

以下是应请求的错误的更多信息：

> library("tidyverse", lib.loc="/Library/Frameworks/R.framework/Versions/3.6/Resources/library")
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called ‘broom’

编辑2:注释中要求的所有错误和消息的详尽打印输出：

> install.packages("tidyverse")
also installing the dependencies ‘colorspace’, ‘sys’, ‘ps’, ‘highr’, ‘markdown’, ‘farver’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘askpass’, ‘rematch’, ‘prettyunits’, ‘processx’, ‘knitr’, ‘yaml’, ‘htmltools’, ‘evaluate’, ‘base64enc’, ‘tinytex’, ‘xfun’, ‘DBI’, ‘tidyselect’, ‘gtable’, ‘lazyeval’, ‘scales’, ‘viridisLite’, ‘withr’, ‘vctrs’, ‘curl’, ‘mime’, ‘openssl’, ‘clipr’, ‘cellranger’, ‘progress’, ‘callr’, ‘fs’, ‘rmarkdown’, ‘whisker’, ‘selectr’, ‘broom’, ‘dbplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, ‘hms’, ‘httr’, ‘jsonlite’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘rlang’, ‘rstudioapi’, ‘rvest’, ‘tidyr’, ‘xml2’


  There are binary versions available but the source versions are later:
            binary source needs_compilation
prettyunits  1.1.0  1.1.1             FALSE
tidyselect   0.2.5  1.0.0              TRUE
vctrs        0.2.1  0.2.2              TRUE
callr        3.4.0  3.4.1             FALSE
broom        0.5.3  0.5.4             FALSE
rlang        0.4.2  0.4.3              TRUE
tidyr        1.0.0  1.0.2              TRUE

Do you want to install from sources the packages which need compilation? (Yes/no/cancel) yes
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/colorspace_1.4-1.tgz'
Content type 'application/x-gzip' length 2522321 bytes (2.4 MB)
==================================================
downloaded 2.4 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/sys_3.3.tgz'
Content type 'application/x-gzip' length 47231 bytes (46 KB)
==================================================
downloaded 46 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/ps_1.3.0.tgz'
Content type 'application/x-gzip' length 209460 bytes (204 KB)
==================================================
downloaded 204 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/highr_0.8.tgz'
Content type 'application/x-gzip' length 41180 bytes (40 KB)
==================================================
downloaded 40 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/markdown_1.1.tgz'
Content type 'application/x-gzip' length 199930 bytes (195 KB)
==================================================
downloaded 195 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/farver_2.0.3.tgz'
Content type 'application/x-gzip' length 1828397 bytes (1.7 MB)
==================================================
downloaded 1.7 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/labeling_0.3.tgz'
Content type 'application/x-gzip' length 61520 bytes (60 KB)
==================================================
downloaded 60 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/munsell_0.5.0.tgz'
Content type 'application/x-gzip' length 243642 bytes (237 KB)
==================================================
downloaded 237 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/RColorBrewer_1.1-2.tgz'
Content type 'application/x-gzip' length 53161 bytes (51 KB)
==================================================
downloaded 51 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/askpass_1.1.tgz'
Content type 'application/x-gzip' length 21926 bytes (21 KB)
==================================================
downloaded 21 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rematch_1.0.1.tgz'
Content type 'application/x-gzip' length 12480 bytes (12 KB)
==================================================
downloaded 12 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/processx_3.4.1.tgz'
Content type 'application/x-gzip' length 236878 bytes (231 KB)
==================================================
downloaded 231 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/knitr_1.27.tgz'
Content type 'application/x-gzip' length 1380627 bytes (1.3 MB)
==================================================
downloaded 1.3 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/yaml_2.2.0.tgz'
Content type 'application/x-gzip' length 201073 bytes (196 KB)
==================================================
downloaded 196 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/htmltools_0.4.0.tgz'
Content type 'application/x-gzip' length 342242 bytes (334 KB)
==================================================
downloaded 334 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/evaluate_0.14.tgz'
Content type 'application/x-gzip' length 74657 bytes (72 KB)
==================================================
downloaded 72 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/base64enc_0.1-3.tgz'
Content type 'application/x-gzip' length 32230 bytes (31 KB)
==================================================
downloaded 31 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/tinytex_0.19.tgz'
Content type 'application/x-gzip' length 98971 bytes (96 KB)
==================================================
downloaded 96 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/xfun_0.12.tgz'
Content type 'application/x-gzip' length 178520 bytes (174 KB)
==================================================
downloaded 174 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/DBI_1.1.0.tgz'
Content type 'application/x-gzip' length 586234 bytes (572 KB)
==================================================
downloaded 572 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/gtable_0.3.0.tgz'
Content type 'application/x-gzip' length 432473 bytes (422 KB)
==================================================
downloaded 422 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/lazyeval_0.2.2.tgz'
Content type 'application/x-gzip' length 158838 bytes (155 KB)
==================================================
downloaded 155 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/scales_1.1.0.tgz'
Content type 'application/x-gzip' length 544693 bytes (531 KB)
==================================================
downloaded 531 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/viridisLite_0.3.0.tgz'
Content type 'application/x-gzip' length 57231 bytes (55 KB)
==================================================
downloaded 55 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/withr_2.1.2.tgz'
Content type 'application/x-gzip' length 152438 bytes (148 KB)
==================================================
downloaded 148 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/curl_4.3.tgz'
Content type 'application/x-gzip' length 741337 bytes (723 KB)
==================================================
downloaded 723 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/mime_0.8.tgz'
Content type 'application/x-gzip' length 35364 bytes (34 KB)
==================================================
downloaded 34 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/openssl_1.4.1.tgz'
Content type 'application/x-gzip' length 2690137 bytes (2.6 MB)
==================================================
downloaded 2.6 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/clipr_0.7.0.tgz'
Content type 'application/x-gzip' length 48251 bytes (47 KB)
==================================================
downloaded 47 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/cellranger_1.1.0.tgz'
Content type 'application/x-gzip' length 103127 bytes (100 KB)
==================================================
downloaded 100 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/progress_1.2.2.tgz'
Content type 'application/x-gzip' length 82991 bytes (81 KB)
==================================================
downloaded 81 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/fs_1.3.1.tgz'
Content type 'application/x-gzip' length 852880 bytes (832 KB)
==================================================
downloaded 832 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rmarkdown_2.1.tgz'
Content type 'application/x-gzip' length 3556971 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/whisker_0.4.tgz'
Content type 'application/x-gzip' length 65424 bytes (63 KB)
==================================================
downloaded 63 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/selectr_0.4-2.tgz'
Content type 'application/x-gzip' length 490483 bytes (478 KB)
==================================================
downloaded 478 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/dbplyr_1.4.2.tgz'
Content type 'application/x-gzip' length 578881 bytes (565 KB)
==================================================
downloaded 565 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/forcats_0.4.0.tgz'
Content type 'application/x-gzip' length 343715 bytes (335 KB)
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downloaded 335 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/ggplot2_3.2.1.tgz'
Content type 'application/x-gzip' length 3973186 bytes (3.8 MB)
==================================================
downloaded 3.8 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/haven_2.2.0.tgz'
Content type 'application/x-gzip' length 1077133 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/hms_0.5.3.tgz'
Content type 'application/x-gzip' length 103612 bytes (101 KB)
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downloaded 101 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/httr_1.4.1.tgz'
Content type 'application/x-gzip' length 492648 bytes (481 KB)
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downloaded 481 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/jsonlite_1.6.tgz'
Content type 'application/x-gzip' length 1117755 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/lubridate_1.7.4.tgz'
Content type 'application/x-gzip' length 1512972 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/modelr_0.1.5.tgz'
Content type 'application/x-gzip' length 199606 bytes (194 KB)
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downloaded 194 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/readr_1.3.1.tgz'
Content type 'application/x-gzip' length 792657 bytes (774 KB)
==================================================
downloaded 774 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/readxl_1.3.1.tgz'
Content type 'application/x-gzip' length 1646895 bytes (1.6 MB)
==================================================
downloaded 1.6 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/reprex_0.3.0.tgz'
Content type 'application/x-gzip' length 424791 bytes (414 KB)
==================================================
downloaded 414 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rstudioapi_0.10.tgz'
Content type 'application/x-gzip' length 214537 bytes (209 KB)
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downloaded 209 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rvest_0.3.5.tgz'
Content type 'application/x-gzip' length 662160 bytes (646 KB)
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downloaded 646 KB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/xml2_1.2.2.tgz'
Content type 'application/x-gzip' length 1102370 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/tidyverse_1.3.0.tgz'
Content type 'application/x-gzip' length 433010 bytes (422 KB)
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downloaded 422 KB


The downloaded binary packages are in
    /var/folders/rb/qs7xx8rs633bk4njyk_6t7bh0000gn/T//RtmphOGt7Z/downloaded_packages
installing the source packages ‘prettyunits’, ‘tidyselect’, ‘vctrs’, ‘callr’, ‘broom’, ‘rlang’, ‘tidyr’

trying URL 'https://cran.rstudio.com/src/contrib/prettyunits_1.1.1.tar.gz'
Content type 'application/x-gzip' length 10366 bytes (10 KB)
==================================================
downloaded 10 KB

trying URL 'https://cran.rstudio.com/src/contrib/tidyselect_1.0.0.tar.gz'
Content type 'application/x-gzip' length 151161 bytes (147 KB)
==================================================
downloaded 147 KB

trying URL 'https://cran.rstudio.com/src/contrib/vctrs_0.2.2.tar.gz'
Content type 'application/x-gzip' length 721926 bytes (705 KB)
==================================================
downloaded 705 KB

trying URL 'https://cran.rstudio.com/src/contrib/callr_3.4.1.tar.gz'
Content type 'application/x-gzip' length 67676 bytes (66 KB)
==================================================
downloaded 66 KB

trying URL 'https://cran.rstudio.com/src/contrib/broom_0.5.4.tar.gz'
Content type 'application/x-gzip' length 1228129 bytes (1.2 MB)
==================================================
downloaded 1.2 MB

trying URL 'https://cran.rstudio.com/src/contrib/rlang_0.4.3.tar.gz'
Content type 'application/x-gzip' length 813395 bytes (794 KB)
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downloaded 794 KB

trying URL 'https://cran.rstudio.com/src/contrib/tidyr_1.0.2.tar.gz'
Content type 'application/x-gzip' length 812005 bytes (792 KB)
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downloaded 792 KB

* installing *source* package ‘prettyunits’ ...
** package ‘prettyunits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prettyunits)
* installing *source* package ‘callr’ ...
** package ‘callr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (callr)
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs


Agreeing to the Xcode/iOS license requires admin privileges, please run “sudo xcodebuild -license” and then retry this command.


ERROR: compilation failed for package ‘rlang’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rlang’
Warning in install.packages :
  installation of package ‘rlang’ had non-zero exit status
ERROR: dependency ‘rlang’ is not available for package ‘vctrs’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/vctrs’
Warning in install.packages :
  installation of package ‘vctrs’ had non-zero exit status
ERROR: dependencies ‘rlang’, ‘vctrs’ are not available for package ‘tidyselect’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/tidyselect’
Warning in install.packages :
  installation of package ‘tidyselect’ had non-zero exit status
ERROR: dependencies ‘rlang’, ‘tidyselect’, ‘vctrs’ are not available for package ‘tidyr’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/tidyr’
Warning in install.packages :
  installation of package ‘tidyr’ had non-zero exit status
ERROR: dependency ‘tidyr’ is not available for package ‘broom’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/broom’
Warning in install.packages :
  installation of package ‘broom’ had non-zero exit status

The downloaded source packages are in
    ‘/private/var/folders/rb/qs7xx8rs633bk4njyk_6t7bh0000gn/T/RtmphOGt7Z/downloaded_packages’

Answer 1

当您调用install.packages("broom") (或insert package)时，将显示您收到的消息：

您已回复yes的Do you want to install from sources the packages which need compilation? (Yes/no/cancel)。

尝试使用no并比较结果。这应该可以解决这个问题。