首页
学习
活动
专区
圈层
工具
发布
社区首页 >问答首页 >返回的输出未进入xlsxwriter

返回的输出未进入xlsxwriter
EN

Stack Overflow用户
提问于 2018-07-12 22:45:12
回答 0查看 61关注 0票数 1

我正在尝试从一个文本文件中收集数据。当我打印输出时,它们返回了我正在寻找的正确值,但是,当我尝试使用xlsxwriter将这些输出放入表中时,表中只包含了txt文件最后一行的输出,重复了文本文件中有行的次数。例如,有5000行文本,我需要3条信息,.xlsx文件有5000行和3列,但都包含文本文件中最后一行的信息。

EC:1 >GO:N-乙基马来酰亚胺还原酶活性;GO:0008748

EC:1 >GO:氧化还原酶活性;GO:0016491

EC:1 >GO:辅酶F420脱氢酶活性降低;GO:0043738

EC:1 >GO:硫氧合酶还原酶活性;GO:0043826

EC:1 >GO:苹果酸乳酸酶活性;GO:0043883

^ txt文件的外观

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

6.6.1.2钴螯合酶活性0051116

... ...。

(除了5000行之外,该表的外观)

感谢您的帮助,致以敬意

代码语言:javascript
复制
import xlsxwriter

File = 'EC_to_GO.txt'  
def analysis(line, output):
    with open(File) as fp:  
        lines = fp.readlines()

    for line in lines:
        output[0] = line[3:].split(' > ')[0]
        output[1] = line[:-14].split(' > GO:')[-1]
        output[2] = line[-8:]
    return output


with open(File) as fp:  
        lines = fp.readlines()

for line in lines:
    if 'Generated on 2018-07-04T09:08Z' in line:
            a = lines.index(line)

    for line in lines:
        if 'GO:cobaltochelatase activity ; GO:0051116' in line:
            b = lines.index(line)

req_list = lines[a:b]

rxn_end_index = []

for i in range(len(req_list)):
    if '> GO:' in req_list[i]:
        rxn_end_index.append(i)

inner_list = []

outer_list =[]

spare = [0] + rxn_end_index

for i in range(len(spare)-1):
    inner_list = req_list[spare[i]:spare[i+1]]
    outer_list.append(inner_list)



res_list=[]
for i in range(len(outer_list)):
    res_list.append(analysis(outer_list[i],['NA','NA','NA']))




    # Create a workbook and add a worksheet.
workbook = xlsxwriter.Workbook('EC_to_GO.xlsx')
worksheet = workbook.add_worksheet('EC_to_GO')

    #res_list1 = [EC, Genome name, GO]

    #for i in res_list:
        #res_list1.append(i)

    # Some data we want to write to the worksheet.
t = tuple(res_list)

    # Start from the first cell. Rows and columns are zero indexed.
row = 0
col = 0

    # Iterate over the data and write it out row by row.
for a,b,c in (t):
    worksheet.write(row, col,     a)
    worksheet.write(row, col + 1, b)
    worksheet.write(row, col + 2, c)  
    row += 1


workbook.close()
EN

回答

页面原文内容由Stack Overflow提供。腾讯云小微IT领域专用引擎提供翻译支持
原文链接:

https://stackoverflow.com/questions/51308602

复制
相关文章

相似问题

领券
问题归档专栏文章快讯文章归档关键词归档开发者手册归档开发者手册 Section 归档