imagej/斐济宏处理

Question

我正在尝试创建一个宏，它将在包含图像的文件中运行循环。为了打开我正在使用的Bio-Format importer的图像，代码工作正常，但是，它每次都会提示我选择文件中的图像。有没有办法让它在文件中自动运行？下面是我的代码。如有任何帮助，将不胜感激..

这些是我尝试过的其他一些格式，但仍然不能正常工作

run("Bio-Formats Importer", "open= + inputDirectory + fileList[i] color_mode=Default view=Hyperstack stack_order=XYCZT");

run("Bio-Formats Importer", "open(fileList) color_mode=Default rois_import=[ROI manager] split_channels view=Hyperstack stack_order=XYCZT");

run("Bio-Formats Importer", "open= + inputDirectory + fileList[i] color_mode=Default rois_import=[ROI manager] split_channels view=Hyperstack stack_order=XYCZT")

run("Bio-Formats", "open=" + fileList[i] " color_mode=Default  open_all_series rois_import=[ROI manager] split_channels view=Hyperstack stack_order=XYCZT");

run("Bio-Formats Importer", "open=["+fileList[i]+"] color_mode=Default view=Hyperstack stack_order=XYCZT series_"+d2s(j,0)); 


setBatchMode(true); 
inputDirectory = getDirectory("Choose a Directory of Image")

fileList = getFileList(inputDirectory);

for (i = 0; i < fileList.length; i++)
{
processImage(fileList[i]);
outputDirectory = "S:/Research/MLW/OUTPUT/";
outputFile = outputDirectory+fileList[i]+".csv";
saveAs("results",outputFile);
}

setBatchMode(false); 

function processImage(imageFile)
{
prevNumResults = nResults;  

run("Bio-Formats Macro Extensions"); 

run("Bio-Formats Importer", "open= + inputDirectory + fileList[i] color_mode=Default rois_import=[ROI manager] split_channels view=Hyperstack stack_order=XYCZT");  

   filename = getTitle();

run("Auto Threshold", "method=Yen white");
run("Skeletonize (2D/3D)");

Answer 1

这可能和在setBatchMode函数中移动所有内容一样简单