我需要从多个输出文件中删除不必要的数据,每个文件的一部分如下所示
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:18697:4431_2:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# 0 hits found
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:26276:5181_1:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# Fields: subject title, query acc., subject acc., evalue, q. start, q. end, s. start, s. end
# 1 hits found
FJ712717_(modified) Trypanosoma brucei brucei from mouse 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence M03117:99:000000000-ALL7G:1:1101:26276:5181_1:N:0:196 FJ712717_(modified) 1.42e-137 1 271 53 323
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:26276:5181_2:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# Fields: subject title, query acc., subject acc., evalue, q. start, q. end, s. start, s. end
# 1 hits found
FJ712717_(modified) Trypanosoma brucei brucei from mouse 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence M03117:99:000000000-ALL7G:1:1101:26276:5181_2:N:0:196 FJ712717_(modified) 1.06e-87 1 197 436 236
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:10339:5290_1:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# 0 hits found
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:10339:5290_2:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# 0 hits found前4行表示一个输出结果。
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:7647:16266_2:N:0:215
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# 0 hits found我需要删除所有0次点击的输出结果,即所有4行(如上所示)。
我注意到,结果是:找到了1次点击,增加了2行。第6行不以"#“符号开头。如何使用
grep -B命令这么做?我的预期输出是一个只有“找到1次点击”结果的文件。如下所示
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:26276:5181_1:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# Fields: subject title, query acc., subject acc., evalue, q. start, q. end, s. start, s. end
# 1 hits found
FJ712717_(modified) Trypanosoma brucei brucei from mouse 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence M03117:99:000000000-ALL7G:1:1101:26276:5181_1:N:0:196 FJ712717_(modified) 1.42e-137 1 271 53 323
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:26276:5181_2:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# Fields: subject title, query acc., subject acc., evalue, q. start, q. end, s. start, s. end
# 1 hits found
FJ712717_(modified) Trypanosoma brucei brucei from mouse 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence M03117:99:000000000-ALL7G:1:1101:26276:5181_2:N:0:196 FJ712717_(modified) 1.06e-87 1 197 436 236
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:11481:5777_1:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# Fields: subject title, query acc., subject acc., evalue, q. start, q. end, s. start, s. end
# 1 hits found
JN673389_(modified) Trypanosoma congolense isolate TS07210 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence M03117:99:000000000-ALL7G:1:1101:11481:5777_1:N:0:196 JN673389_(modified) 2.04e-105 1 231 23 253
# BLASTN 2.3.0+
# Query: M03117:99:000000000-ALL7G:1:1101:11481:5777_2:N:0:196
# Database: /home/alex/blast/db/tryps_ITS/tryps_ITS_db
# Fields: subject title, query acc., subject acc., evalue, q. start, q. end, s. start, s. end
# 1 hits found
TCU22315_(modified) Trypanosoma congolense IL1180 18S, 5.8S, 28S-LS1, srRNA1, complete sequence, and 28S-LS2 ribosomal RNA, partial sequence M03117:99:000000000-ALL7G:1:1101:11481:5777_2:N:0:196 TCU22315_(modified) 1.40e-75 1 156 1176 1021发布于 2016-06-08 17:55:42
您可以使用tac反转文件行,并在匹配模式之前删除3行,包括使用sed包含匹配模式的行,如下所示:
tac filename | sed '/0 hits/I,+3 d' | tac如果您想就地编辑文件,可以在-i命令中使用sed选项,
tac filename | sed -i '/0 hits/I,+3 d' filename | tachttps://unix.stackexchange.com/questions/288491
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