R3.5.1 Ubuntu中RODBC安装的问题

Question

关于RODBC的线程这里是旧的，大约7年前，他们关于安装r-cran-odbc和libiodbc2-dev的解决方案不起作用。从R3.5.1开始，我得到了与7年前相同的错误

install.packages("RODBC", keep_outputs = T)

configure: error: "ODBC headers sql.h and sqlext.h not found"
ERROR: configuration failed for package ‘RODBC’
* removing ‘/opt/conda/lib/R/library/RODBC’

尽管已经安装了上述软件包。所以

从R3.5.1(R和Ubuntu的最新版本)？

<#>How开始在Ubuntu中安装RODBC最小可复制基(Dockerfile) # Copyright (c) Jupyter Development Team. # Distributed under the terms of the Modified BSD License. ARG BASE_CONTAINER=jupyter/minimal-notebook FROM $BASE_CONTAINER LABEL maintainer="Jupyter Project " USER root # R pre-requisites RUN apt-get update && \ apt-get install -y --no-install-recommends \ fonts-dejavu \ tzdata \ libiodbc2-dev \ r-cran-rodbc \ gfortran \ gcc && \ rm -rf /var/lib/apt/lists/* USER $NB_UID # R packages RUN conda install --quiet --yes \ 'r-base=3.5.1' \ 'r-irkernel=0.8*' \ 'r-plyr=1.8*' \ 'r-devtools=1.13*' \ 'r-tidyverse=1.2*' \ 'r-shiny=1.2*' \ 'r-rmarkdown=1.11*' \ 'r-forecast=8.2*' \ 'r-rsqlite=2.1*' \ 'r-reshape2=1.4*' \ 'r-nycflights13=1.0*' \ 'r-caret=6.0*' \ 'r-rcurl=1.95*' \ 'r-crayon=1.3*' \ 'r-randomforest=4.6*' \ 'r-htmltools=0.3*' \ 'r-sparklyr=0.9*' \ 'r-htmlwidgets=1.2*' \ 'r-hexbin=1.27*' && \ conda clean -tipsy && \ fix-permissions $CONDA_DIR 下面的包libiodbc2-dev和r-cran-rodbc无法解决这个问题。 规格 $ uname -a Linux 370485a13e40 4.9.93-linuxkit-aufs #1 SMP Wed Jun 6 16:55:56 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux sql.h位于以下位置 $ apt-file sql.h libdballe-dev: /usr/include/dballe/sql/sql.h libiodbc2-dev: /usr/include/iodbc/sql.h libmailutils-dev: /usr/include/mailutils/sql.h libwine-dev: /usr/include/wine/windows/sql.h libwine-development-dev: /usr/include/wine-development/wine/windows/sql.h mingw-w64-common: /usr/share/mingw-w64/include/sql.h mingw-w64-i686-dev: /usr/i686-w64-mingw32/include/sql.h mingw-w64-x86-64-dev: /usr/x86_64-w64-mingw32/include/sql.h pike7.8-core: /usr/lib/pike7.8/include/sql.h pike8.0-core: /usr/lib/pike8.0/include/sql.h unixodbc-dev: /usr/include/sql.h 和 # apt-file search /sqlext.h libiodbc2-dev: /usr/include/iodbc/sqlext.h libwine-dev: /usr/include/wine/windows/sqlext.h libwine-development-dev: /usr/include/wine-development/wine/windows/sqlext.h mingw-w64-common: /usr/share/mingw-w64/include/sqlext.h mingw-w64-i686-dev: /usr/i686-w64-mingw32/include/sqlext.h mingw-w64-x86-64-dev: /usr/x86_64-w64-mingw32/include/sqlext.h unixodbc-dev: /usr/include/sqlext.h

Answer 1

可以通过从conda安装r-rodbc包来解决缺少的标头问题，以便

RUN conda install --quiet --yes \
    'r-base=3.5.1' \
    'r-rodbc=1.3*' \

然后，您将得到以下错误

hecking for library containing SQLTables... no
configure: error: "no ODBC driver manager found"
ERROR: configuration failed for package ‘RODBC’
* removing ‘/opt/conda/lib/R/library/RODBC’
* restoring previous ‘/opt/conda/lib/R/library/RODBC’

为此，您需要从apt获得r-cran-odbc、unixodbc和‘unixodbc’(仅仅unixodbc是不够的)，以便您的Dockerfile变为

# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
ARG BASE_CONTAINER=jupyter/minimal-notebook
FROM $BASE_CONTAINER

LABEL maintainer="Jupyter Project "

USER root

# R pre-requisites
RUN apt-get update && \
    apt-get install -y --no-install-recommends \
    fonts-dejavu \
    tzdata \
    unixodbc \
    unixodbc-dev \
    r-cran-rodbc \
    gfortran \
    gcc && \
    rm -rf /var/lib/apt/lists/*

USER $NB_UID

# R packages
RUN conda install --quiet --yes \
    'r-base=3.5.1' \
    'r-rodbc=1.3*' \
    'unixodbc=2.3.*' \
    'r-irkernel=0.8*' \
    'r-plyr=1.8*' \
    'r-devtools=1.13*' \
    'r-tidyverse=1.2*' \
    'r-shiny=1.2*' \
    'r-rmarkdown=1.11*' \
    'r-forecast=8.2*' \
    'r-rsqlite=2.1*' \
    'r-reshape2=1.4*' \
    'r-nycflights13=1.0*' \
    'r-caret=6.0*' \
    'r-rcurl=1.95*' \
    'r-crayon=1.3*' \
    'r-randomforest=4.6*' \
    'r-htmltools=0.3*' \
    'r-sparklyr=0.9*' \
    'r-htmlwidgets=1.2*' \
    'r-hexbin=1.27*' && \
    conda clean -tipsy && \
    fix-permissions $CONDA_DIR