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社区首页 >问答首页 >检验残差和可视化零膨胀波分裂r

检验残差和可视化零膨胀波分裂r
EN

Stack Overflow用户
提问于 2017-03-28 17:17:19
回答 1查看 3.9K关注 0票数 4

我运行的CPUE数据的零充气模型。这个数据有零通胀的证据,我已经用Vuong检验证实了这一点(代码如下)。AIC的全模型(zint)优于null。我现在想:

  1. 检查整个模型的剩余部分,以确定模型是否适合(由于缺乏来自同事、互联网和R类书籍的信息)
  2. 如果模型合适,则可视化模型的输出(如何在使用偏移量变量时建立实际参数值的方程)。

我向部门的一些统计人员寻求帮助(他们以前从未这样做过,并将我发送到相同的google搜索站点),在统计部门之外(每个人都太忙)和堆叠溢出源。

我希望代码或指导书籍(免费在线)的代码,处理可视化压缩和模型适合时,使用偏移变量。

代码语言:javascript
复制
 yc=read.csv("CPUE_ycs_trawl_withcobb_BLS.csv",header=TRUE)
 yc=yc[which(yc$countinyear<150),]
 yc$fyear=as.factor(yc$year_cap)
 yc$flocation=as.factor(yc$location)
 hist(yc$countinyear,20)
 yc$logoffset=log(yc$numtrawlyr)

 ###Run Zero-inflated poisson with offset for CPUE####
 null <- formula(yc$countinyear ~ 1| 1)
 znull <- zeroinfl(null, offset=logoffset,dist = "poisson",link = "logit",
 data = yc)

 int <- formula(yc$countinyear ~ assnage * spawncob| assnage * spawncob)
 zint <- zeroinfl(int, offset=logoffset,dist = "poisson",link = "logit", data  
 = yc)
 AIC(znull,zint)

  g1=glm(countinyear ~ assnage * spawncob,
  offset=logoffset,data=yc,family=poisson)
  summary(g1)

 ####Vuong test to see if ZIP is even needed##
 vuong(g1,zint)

 ##########DATASET###########

年份是第1栏

代码语言:javascript
复制
 ##########DATASET###########

count assnage    spawncob      logoffset
56      0       0.32110173      2.833213
44      1       0.33712     2.833213
60      2       0.34053264      2.833213
0       4       0.19381496      2.833213
1       3       0.30819333      2.833213
33      0       0.32110173      2.833213
40      1       0.33712     2.833213
25      2       0.34053264      2.833213
0       3       0.30819333      2.833213
2       4       0.19381496      2.833213
6       0       0.32110173      2.833213
13      1       0.33712     2.833213
7       2       0.34053264      2.833213
0       3       0.30819333      2.833213
0       4       0.19381496      NA
5       0       0.32110173      2.833213
31      1       0.33712     2.833213
73      2       0.34053264      2.833213
0       3       0.30819333      2.833213
1       4       0.19381496      2.833213
0       0       0.32110173      2.833213
7       1       0.33712     2.833213
75      2       0.34053264      2.833213
3       3       0.30819333      2.833213
0       4       0.19381496      2.833213
19      0       0.32110173      2.833213
13      1       0.33712     2.833213
18      2       0.34053264      2.833213
0       3       0.30819333      2.833213
2       4       0.19381496      2.833213
11      0       0.32110173      2.833213
14      1       0.33712     2.833213
32      2       0.34053264      2.833213
1       3       0.30819333      2.833213
1       4       0.19381496      2.833213
12      0       0.32110173      2.833213
3       1       0.33712     2.833213
9       2       0.34053264      2.833213
2       3       0.30819333      2.833213
0       4       0.19381496      2.833213
5       0       0.32110173      2.833213
15      1       0.33712     2.833213
22      2       0.34053264      2.833213
5       3       0.30819333      2.833213
1       4       0.19381496      2.833213
1       0       0.32110173      2.833213
16      1       0.33712     2.833213
33      2       0.34053264      2.833213
4       3       0.30819333      2.833213
2       4       0.19381496      2.833213
6       0       0.32110173      2.833213
17      1       0.33712     2.833213
26      2       0.34053264      2.833213
1       3       0.30819333      2.833213
0       4       0.19381496      2.833213
16      0       0.32110173      2.833213
16      1       0.33712     2.833213
11      2       0.34053264      2.833213
1       3       0.30819333      2.833213
1       4       0.19381496      2.833213
2       0       0.32110173      2.833213
8       1       0.33712     2.833213
18      2       0.34053264      2.833213
0       3       0.30819333      2.833213
0       4       0.19381496      2.833213
2       0       0.32110173      2.833213
27      1       0.33712     2.833213
49      2       0.34053264      2.833213
1       3       0.30819333      2.833213
0       4       0.19381496      2.833213
1       0       0.32110173      2.833213
6       1       0.33712     2.833213
36      2       0.34053264      2.833213
17      3       0.30819333      2.833213
0       4       0.19381496      2.833213
10      0       0.32110173      2.833213
21      1       0.33712     2.833213
78      2       0.34053264      2.833213
32      3       0.30819333      2.833213
0       4       0.19381496      2.833213
0       0       0.32110173      2.833213
8       1       0.33712     2.833213
14      2       0.34053264      2.833213
7       3       0.30819333      2.833213
0       4       0.19381496      2.833213
0       1       0.13648433      2.833213
6       1       0.23952033      2.833213
12      2       0.32110173      2.833213
0       3       0.33712     2.833213
0       4       0.34053264      2.833213
30      0       0.13648433      2.833213
30      1       0.23952033      2.833213
25      2       0.32110173      2.833213
30      3       0.33712     2.833213
30      4       0.34053264      2.833213
68      0       0.13648433      2.833213
68      1       0.23952033      2.833213
55      2       0.32110173      2.833213
68      3       0.33712     2.833213
68      4       0.34053264      2.833213
0       0       0.13648433      2.833213
12      1       0.23952033      2.833213
26      2       0.32110173      2.833213
2       3       0.33712     2.833213
1       4       0.34053264      2.833213
0       0       0.13648433      2.833213
17      1       0.23952033      2.833213
36      2       0.32110173      2.833213
1       3       0.33712     2.833213
4       4       0.34053264      2.833213
1       0       0.13648433      2.833213
1       1       0.23952033      2.833213
4       2       0.32110173      2.833213
4       3       0.33712     2.833213
0       4       0.34053264      2.833213
3       0       0.13648433      2.833213
3       1       0.23952033      2.833213
3       2       0.32110173      2.833213
3       3       0.33712     2.833213
3       4       0.34053264      2.833213
0       0       0.13648433      2.833213
29      1       0.23952033      2.833213
33      2       0.32110173      2.833213
0       3       0.33712     2.833213
0       4       0.34053264      2.833213
0       0       0.13648433      2.833213
10      1       0.23952033      2.833213
7       2       0.32110173      2.833213
1       3       0.33712     2.833213
0       4       0.34053264      2.833213
0       0       0.13648433      2.833213
6       1       0.23952033      2.833213
18      2       0.32110173      2.833213
1       3       0.33712     2.833213
0       4       0.34053264      2.833213
0       0       0.13648433      2.833213
18      1       0.23952033      2.833213
37      2       0.32110173      2.833213
1       3       0.33712     2.833213
1       4       0.34053264      2.833213
0       0       0.13648433      2.833213
13      1       0.23952033      2.833213
26      2       0.32110173      2.833213
8       3       0.33712     2.833213
0       4       0.34053264      2.833213
0       0       0.13648433      2.833213
0       1       0.23952033      2.833213
1       2       0.32110173      2.833213
0       3       0.33712     2.833213
0       4       0.34053264      2.833213
0       0       0.13648433      2.833213
1       1       0.23952033      2.833213
5       2       0.32110173      2.833213
0       3       0.33712     2.833213
0       4       0.34053264      2.833213
0       0       0.13648433      2.833213
29      1       0.23952033      2.833213
15      2       0.32110173      2.833213
2       3       0.33712     2.833213
0       4       0.34053264      2.833213
0       0       0.13648433      2.833213
19      1       0.23952033      2.833213
25      2       0.32110173      2.833213
3       3       0.33712     2.833213
1       4       0.34053264      2.833213
0       0       0.13648433      2.833213
24      1       0.23952033      2.833213
40      2       0.32110173      2.833213
6       3       0.33712     2.833213
1       4       0.34053264      2.833213
0       0       0.03678637      2.772589
28      1       0.07414634      2.772589
28      2       0.13648433      2.772589
3       3       0.23952033      2.772589
2       4       0.32110173      2.772589
0       0       0.03678637      2.772589
3       1       0.07414634      2.772589
2       2       0.13648433      2.772589
0       3       0.23952033      2.772589
0       4       0.32110173      2.772589
4       0       0.03678637      2.772589
14      1       0.07414634      2.772589
6       2       0.13648433      2.772589
0       3       0.23952033      2.772589
0       4       0.32110173      2.772589
0       0       0.03678637      2.772589
6       1       0.07414634      2.772589
3       2       0.13648433      2.772589
2       3       0.23952033      2.772589
0       4       0.32110173      2.772589
0       0       0.03678637      2.772589
8       1       0.07414634      2.772589
2       2       0.13648433      2.772589
4       3       0.23952033      2.772589
1       4       0.32110173      2.772589
1       0       0.03678637      2.772589
12      1       0.07414634      2.772589
23      2       0.13648433      2.772589
0       3       0.23952033      2.772589
0       4       0.32110173      2.772589
0       0       0.03678637      2.772589
24      1       0.07414634      2.772589
56      2       0.13648433      2.772589
7       3       0.23952033      2.772589
4       4       0.32110173      2.772589
0       0       0.03678637      2.772589
22      1       0.07414634      2.772589
45      2       0.13648433      2.772589
3       3       0.23952033      2.772589
0       4       0.32110173      2.772589
0       0       0.03678637      2.772589
2       1       0.07414634      2.772589
18      2       0.13648433      2.772589
1       3       0.23952033      2.772589
0       4       0.32110173      2.772589
0       0       0.03678637      2.772589
5       1       0.07414634      2.772589
18      2       0.13648433      2.772589
5       3       0.23952033      2.772589
1       4       0.32110173      2.772589
0       0       0.03678637      2.772589
9       1       0.07414634      2.772589
25      2       0.13648433      2.772589
6       3       0.23952033      2.772589
1       4       0.32110173      2.772589
0       0       0.03678637      2.772589
1       1       0.07414634      2.772589
3       2       0.13648433      2.772589
1       3       0.23952033      2.772589
1       4       0.32110173      2.772589
0       0       0.03678637      2.772589
3       1       0.07414634      2.772589
16      2       0.13648433      2.772589
0       3       0.23952033      2.772589
0       4       0.32110173      2.772589
0       0       0.03678637      2.772589
7       1       0.07414634      2.772589
21      2       0.13648433      2.772589
8       3       0.23952033      2.772589
0       4       0.32110173      2.772589
0       0       0.03678637      2.772589
5       1       0.07414634      2.772589
22      2       0.13648433      2.772589
6       3       0.23952033      2.772589
0       4       0.32110173      2.772589
0       0       0.03678637      2.772589
11      1       0.07414634      2.772589
22      2       0.13648433      2.772589
6       3       0.23952033      2.772589
0       4       0.32110173      2.772589
1       0       0.11532605      2.564949
7       1       0.05628636      2.564949
11      2       0.03678637      2.564949
0       3       0.07414634      2.564949
0       4       0.13648433      2.564949
0       0       0.11532605      2.564949
4       1       0.05628636      2.564949
4       2       0.03678637      2.564949
0       3       0.07414634      2.564949
0       4       0.13648433      2.564949
0       0       0.11532605      2.564949
0       1       0.05628636      2.564949
5       2       0.03678637      2.564949
0       3       0.07414634      2.564949
1       4       0.13648433      2.564949
0       0       0.11532605      2.564949
3       1       0.05628636      2.564949
4       2       0.03678637      2.564949
0       3       0.07414634      2.564949
0       4       0.13648433      2.564949
0       0       0.11532605      2.564949
3       1       0.05628636      2.564949
0       2       0.03678637      2.564949
1       3       0.07414634      2.564949
0       4       0.13648433      2.564949
0       0       0.11532605      2.564949
1       1       0.05628636      2.564949
0       2       0.03678637      2.564949
0       3       0.07414634      2.564949
0       4       0.13648433      2.564949
0       0       0.11532605      2.564949
6       1       0.05628636      2.564949
9       2       0.03678637      2.564949
3       3       0.07414634      2.564949
0       4       0.13648433      2.564949
0       0       0.11532605      2.564949
3       1       0.05628636      2.564949
4       2       0.03678637      2.564949
3       3       0.07414634      2.564949
1       4       0.13648433      2.564949
0       0       0.11532605      2.564949
1       1       0.05628636      2.564949
3       2       0.03678637      2.564949
4       3       0.07414634      2.564949
0       4       0.13648433      2.564949
1       0       0.11532605      2.564949
3       1       0.05628636      2.564949
10      2       0.03678637      2.564949
2       3       0.07414634      2.564949
1       4       0.13648433      2.564949
0       0       0.11532605      2.564949
0       1       0.05628636      2.564949
3       2       0.03678637      2.564949
3       3       0.07414634      2.564949
1       4       0.13648433      2.564949
0       0       0.11532605      2.564949
24      1       0.05628636      2.564949
43      2       0.03678637      2.564949
11      3       0.07414634      2.564949
3       4       0.13648433      2.564949
0       0       0.11532605      2.564949
3       1       0.05628636      2.564949
19      2       0.03678637      2.564949
14      3       0.07414634      2.564949
2       4       0.13648433      2.564949
0       0       0.09016875      NA
25      1       0.14227471      2.833213
2       2       0.11532605      2.833213
0       3       0.05628636      2.833213
0       4       0.03678637      2.833213
0       0       0.09016875      2.833213
14      1       0.14227471      2.833213
0       2       0.11532605      2.833213
0       3       0.05628636      2.833213
0       4       0.03678637      2.833213
0       0       0.09016875      2.833213
12      1       0.14227471      2.833213
4       2       0.11532605      2.833213
0       3       0.05628636      2.833213
0       4       0.03678637      2.833213
1       0       0.09016875      2.833213
42      1       0.14227471      2.833213
20      2       0.11532605      2.833213
1       3       0.05628636      2.833213
2       4       0.03678637      2.833213
0       0       0.09016875      2.833213
48      1       0.14227471      2.833213
40      2       0.11532605      2.833213
1       3       0.05628636      2.833213
0       4       0.03678637      2.833213
10      0       0.09016875      2.833213
23      2       0.11532605      2.833213
0       3       0.05628636      2.833213
2       4       0.03678637      2.833213
2       0       0.09016875      2.833213
89      1       0.14227471      2.833213
5       2       0.11532605      2.833213
1       3       0.05628636      2.833213
6       4       0.03678637      2.833213
0       0       0.09016875      2.833213
27      1       0.14227471      2.833213
9       2       0.11532605      2.833213
3       3       0.05628636      2.833213
2       4       0.03678637      2.833213
1       0       0.09016875      2.833213
6       1       0.14227471      2.833213
0       2       0.11532605      2.833213
1       3       0.05628636      2.833213
0       4       0.03678637      2.833213
0       0       0.09016875      2.833213
65      1       0.14227471      2.833213
35      2       0.11532605      2.833213
1       3       0.05628636      2.833213
2       4       0.03678637      2.833213
0       0       0.09016875      2.833213
29      1       0.14227471      2.833213
26      2       0.11532605      2.833213
3       3       0.05628636      2.833213
1       4       0.03678637      2.833213
4       0       0.09016875      2.833213
105     1       0.14227471      2.833213
5       2       0.11532605      2.833213
0       3       0.05628636      2.833213
1       4       0.03678637      2.833213
4       0       0.09016875      2.833213
107     1       0.14227471      2.833213
5       2       0.11532605      2.833213
0       3       0.05628636      2.833213
0       4       0.03678637      2.833213
0       0       0.09016875      2.833213
17      1       0.14227471      2.833213
1       2       0.11532605      2.833213
0       3       0.05628636      2.833213
0       4       0.03678637      2.833213
3       0       0.09016875      2.833213
106     1       0.14227471      2.833213
1       2       0.11532605      2.833213
1       3       0.05628636      2.833213
0       4       0.03678637      2.833213
0       0       0.09016875      2.833213
21      1       0.14227471      2.833213
14      2       0.11532605      2.833213
5       3       0.05628636      2.833213
1       4       0.03678637      2.833213
0       0       0.09016875      2.833213
35      1       0.14227471      2.833213
12      2       0.11532605      2.833213
8       3       0.05628636      2.833213
2       4       0.03678637      2.833213
4       0       0.13510174      1.791759
1       1       0.10188844      1.791759
4       2       0.09016875      1.791759
0       3       0.14227471      1.791759
0       4       0.11532605      1.791759
3       0       0.13510174      1.791759
16      1       0.10188844      1.791759
11      2       0.09016875      1.791759
0       3       0.14227471      1.791759
0       4       0.11532605      1.791759
4       0       0.13510174      1.791759
20      1       0.10188844      1.791759
7       2       0.09016875      1.791759
0       3       0.14227471      1.791759
0       4       0.11532605      1.791759
0       0       0.13510174      1.791759
3       1       0.10188844      1.791759
1       2       0.09016875      1.791759
1       3       0.14227471      1.791759
1       4       0.11532605      1.791759
0       0       0.13510174      1.791759
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EN

回答 1

Stack Overflow用户

回答已采纳

发布于 2017-04-24 09:24:01

为了可视化概率回归模型的拟合优度,“标准”残差(如泊松或偏差)往往信息不多,因为它们主要是捕捉平均分布的模型,而不是整个分布的模型。有时使用的一种选择是(随机)分位数残差。没有随机化,它们被定义为qnorm(pdist(y)),其中pdist()是拟合的分布函数(这里是ZIP模型),y是观测值,qnorm()是标准正态分布的分位数函数。如果模型符合,残差的分布应该是标准正态分布,并且可以在Q-Q图中检查。在离散分布(如这里)的情况下,需要随机化来分解数据的离散性质。详见邓恩与斯迈思(1996年,计算与图形统计杂志,5,236-244)。在R中,您可以使用来自package的countreg包(希望不久也能在CRAN上)用于这些。

另一种检查数据边缘分布的方法是所谓的根图。它直观地比较了计数的观测频率和拟合频率,0,1,.它通常比随机分位数残差的Q-Q图更好地显示过零和/或过分散问题。详见我们的论文Kleiber & Zeileis (2016年,美国统计学家,70(3),296-303,指定用途:10.1080/00031305.2016.1173590)。

把这些应用到你的回归模型中,很快就会发现,零膨胀的泊松并不能解释反应中的过度分散。(以泊松为基础的分布数量达到和超过100,几乎不太适合。)此外,零通货膨胀模型不太适合,因为对于assnage =1和=2时,只有很少的零,并且不需要零通货膨胀。这导致向-Inf方向的零膨胀部分对应的系数具有很大的标准误差(如二元回归中的准分离)。因此,两部分的跨栏模型比较适合,而且可能更容易解释。最后,由于两个assnage组是不同的,所以我会将assnage编码为一个因素(我不清楚您是否已经这么做了)。

因此,为了分析您的数据,我使用了您在文章中提供的yc,并确保:

代码语言:javascript
复制
yc$assnage <- factor(yc$assnage)

为了第一次探索assnage的影响,我绘制了count是否为正(左:零栏)和对数尺度上的正count (右:计数)。

代码语言:javascript
复制
plot(factor(count > 0, levels = c(FALSE, TRUE), labels = c("=0", ">0")) ~ assnage,
  data = yc, ylab = "count", main = "Zero hurdle")
plot(count ~ assnage, data = yc, subset = count > 0,
  log = "y", main = "Count (positive)")

然后,我使用来自package的countreg包来拟合ZIP、ZINB和跨栏NB模型.这还包含zeroinfl()hurdle()函数的更新版本。

代码语言:javascript
复制
install.packages("countreg", repos = "http://R-Forge.R-project.org")
library("countreg")
zip <- zeroinfl(count ~ assnage * spawncob, offset = logoffset,
  data = yc, dist = "poisson")
zinb <- zeroinfl(count ~ assnage * spawncob, offset = logoffset,
  data = yc, dist = "negbin")
hnb <- hurdle(count ~ assnage * spawncob, offset = logoffset, data = yc,
  dist = "negbin")

ZIP显然是不合适的,而跨栏NB略好于ZINB。

代码语言:javascript
复制
BIC(zip, zinb, hnb)
##      df      BIC
## zip  20 7700.085
## zinb 21 3574.720
## hnb  21 3556.693

如果你检查summary(zinb),你也会发现零通货膨胀部分中的一些系数在10左右(对于一个虚拟变量),标准误差大一个或两个数量级。这在本质上意味着对应组中的零通货膨胀概率为零,因为负二项分布对零响应的概率权重已经足够大(assnage群1和2)。

为了可视化ZIP模型不适合,而HNB适当地捕获响应,我们现在可以使用根目录。

代码语言:javascript
复制
rootogram(zip, main = "ZIP", ylim = c(-5, 15), max = 50)
rootogram(hnb, main = "HNB", ylim = c(-5, 15), max = 50)

ZIP的类波模式清楚地显示了模型未适当捕获的数据中的过分散。相比之下,这一障碍相当合适。

作为最后的检验,我们还可以查看跨栏模型中分位数残差的Q-Q图。这些看起来相当正常,并没有显示出可疑的偏离模型。

代码语言:javascript
复制
qqrplot(hnb, main = "HNB")

由于残值是随机的,您可以重新运行代码几次,以获得变化的印象。qqrplot()也有一些参数,让我们在一个图中探索这种变化。

票数 4
EN
页面原文内容由Stack Overflow提供。腾讯云小微IT领域专用引擎提供翻译支持
原文链接:

https://stackoverflow.com/questions/43075911

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