为perl安装GD模块-安装程序时出错

Question

我目前正在Ubuntu安装Circos。

按照说明，我已进入bin文件夹并运行perl circos

我收到一个错误，告诉我一堆模块没有安装。我试着安装它们，除了两台外，它们都工作了。

当我进入cpan外壳时：

cpan[7]> install GD.pm
Running install for module 'GD'
  LDS/GD-2.56.tar.gz
  Has already been unwrapped into directory /home/qiime/.cpan/build/GD-2.56-DqDuWT
  LDS/GD-2.56.tar.gz
  '/usr/bin/perl Build.PL --installdirs site' returned status 512, not re-running

如果我从主终端运行它：

qiime@qiime-190-virtual-box:~/Documents/circos-0.69/bin$ perl -MCPAN -e 'install GD'
Reading '/home/qiime/.cpan/Metadata'
  Database was generated on Wed, 27 Jan 2016 07:41:02 GMT
Running install for module 'GD'
Checksum for /home/qiime/.cpan/sources/authors/id/L/LD/LDS/GD-2.56.tar.gz ok

==> Couldn't mkdir '/home/qiime/.cpan/build/tmp-8161': Permission denied

==> Cannot continue: Please find the reason why I cannot make the <==
==> directory                                                     <==
==> /home/qiime/.cpan/build/tmp-8161                              <==
==> and fix the problem, then retry.                              <==

每隔(~15个模块)模块安装都没有问题。我现在不知道该怎么办。我想这很简单，我错过了.？

为了完整起见，下面是尝试运行perl circos时的错误

qiime@qiime-190-virtual-box:~/Documents/circos-0.69/bin$ perl circos
*** REQUIRED MODULE(S) MISSING OR OUT-OF-DATE ***

You are missing one or more Perl modules, require newer versions, or some modules failed to load. Use CPAN to install it as described in this tutorial

http://www.circos.ca/documentation/tutorials/configuration/perl_and_modules

missing GD
  error Can't locate GD.pm in @INC (@INC contains: /home/qiime/Documents/circos-0.69/bin/lib /home/qiime/Documents/circos-0.69/bin/../lib /home/qiime/Documents/circos-0.69/bin /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at (eval 25) line 1.
missing GD::Polyline
  error Can't locate GD/Polyline.pm in @INC (@INC contains: /home/qiime/Documents/circos-0.69/bin/lib /home/qiime/Documents/circos-0.69/bin/../lib /home/qiime/Documents/circos-0.69/bin /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at (eval 26) line 1.

编辑: UPDATE我发现我可能没有安装libgd，所以我这么做了。我尝试在install GD.pm shell中运行cpan：

cpan[1]> install GD.pm
Reading '/home/qiime/.cpan/Metadata'
  Database was generated on Wed, 27 Jan 2016 07:41:02 GMT
Running install for module 'GD'
Checksum for /home/qiime/.cpan/sources/authors/id/L/LD/LDS/GD-2.56.tar.gz ok
Scanning cache /home/qiime/.cpan/build for sizes
............................................................................DONE
Configuring L/LD/LDS/GD-2.56.tar.gz with Build.PL
Configuring for libgd version 2.0.36.
Checking for stray libgd header files...none found.

Unknown option: installdirs
Usage: perl Build.PL [options]

Configure GD module.

 Options:
     -options       "JPEG,FT,PNG,GIF,XPM,ANIMGIF"   feature options, separated by commas
     -lib_gd_path   path            path to libgd
     -lib_ft_path   path            path to Freetype library
     -lib_png_path  path            path to libpng
     -lib_jpeg_path path            path to libjpeg
     -lib_xpm_path  path            path to libxpm
     -lib_zlib_path path            path to libpng
     -ignore_missing_gd             Ignore missing or old libgd installations and try to compile anyway

If no options are passed on the command line.  The program will
attempt to autoconfigure itself with the gdlib-config program (present
in GD versions 2.0.27 or later).  Otherwise it will prompt for these
values interactively.
Warning: No success on command[/usr/bin/perl Build.PL --installdirs site]
  LDS/GD-2.56.tar.gz
  /usr/bin/perl Build.PL --installdirs site -- NOT OK
Failed during this command:
 LDS/GD-2.56.tar.gz                           : writemakefile NO '/usr/bin/perl Build.PL --installdirs site' returned status 512

Answer 1

这本身并不是一个解决办法，但请看一看：

• 无法使用cpan在达尔文13.0.1上安装GD模块

Answer 2

正如G.Cito所建议的，perl中的GD模块存在一个问题。

我使用了他发布的说明以及以下内容来修复错误：

• 无法使用cpan在达尔文13.0.1上安装GD模块
• 在OS上安装Circos

具体来说，最后一段代码是我为perl正确安装GD模块所需要的：

srctemp$ curl -O http://www.cpan.org/authors/id/L/LD/LDS/GD-2.49.tar.gz (if curl fails copy and past on your browser)
srctemp$ tar -xzvf GD-2.49.tar.gz
srctemp$ cd GD-2.49
srctemp/GD-2.49$ perl Makefile.PL
srctemp/GD-2.49$ make
srctemp/GD-2.49$ sudo make install