曲线环下的r阴影面积

Question

最近，我问了一个关于如何从同一个data.frame生成多个y轴的地块的问题。这个解决方案工作得很好，(available here)，但是我似乎无法在第二个y轴上填充曲线下的区域。"Polygon“似乎是常见的解决方案，但当我尝试将其嵌套到for-循环中时，我无法找到如何适当地选择x和y坐标。任何建议都是有用的。

可重复样品：

df6 <- structure(list(Year = c("2009", "2009", "2009", "2009", "2009", 
"2009", "2009", "2009", "2009", "2009", "2009", "2009", "2009", 
"2009", "2009", "2009", "2009", "2009", "2009", "2009", "2009", 
"2010", "2010", "2010", "2010", "2010", "2010", "2010", "2010", 
"2010", "2010", "2010", "2010", "2010", "2010", "2010", "2010", 
"2010", "2010", "2010", "2010", "2010", "2010", "2010", "2010", 
"2011", "2011", "2011", "2011", "2011", "2011", "2011", "2011", 
"2011", "2011", "2011", "2011", "2011", "2011", "2011", "2011", 
"2011", "2011", "2011", "2011", "2011", "2011", "2012", "2012", 
"2012"), plot = c("FA6", "FA7", "FK1", "FK2", "FK3", "FO1", "FO2", 
"FO6", "GA2", "GA4", "GR1", "GR2", "HE2", "HE3", "LY1", "LY3", 
"LY8", "NM2", "NM3", "TH3", "TH5", "BR1", "BR8", "FA5", "FA6", 
"FA7", "FK1", "FK2", "FK3", "FO1", "FO2", "FO6", "GA2", "GA4", 
"GR1", "GR2", "HE2", "HE3", "LY1", "LY3", "LY8", "NM2", "NM3", 
"TH3", "TH5", "FA5", "FA6", "FA7", "FK1", "FK2", "FK3", "FO1", 
"FO2", "FO6", "GA2", "GA4", "GR1", "GR2", "HE2", "HE3", "LY1", 
"LY3", "LY8", "NM2", "NM3", "TH3", "TH5", "HE2", "HE3", "TH5"
), AvgRW = c(0.628666666666667, 0.485027777777778, 0.479269230769231, 
0.826875, 0.633269230769231, 1.01830769230769, 1.34580555555556, 
1.13061764705882, 0.422375, 1.377625, 0.535375, 0.366384615384615, 
0.493119047619048, 0.300777777777778, 0.971923076923077, 1.02302941176471, 
1.47245833333333, 1.00654166666667, 0.56425, 1.66342857142857, 
1.28477586206897, 0.860666666666667, 2.10155130769231, 1.74626923076923, 
0.616148148148148, 0.42775, 0.402576923076923, 0.859333333333333, 
0.608961538461538, 1.28303846153846, 1.84344444444444, 1.52214705882353, 
0.425546875, 1.66179166666667, 0.647208333333333, 0.390461538461538, 
0.565892857142857, 0.237388888888889, 1.60419230769231, 1.16611764705882, 
1.95329166666667, 1.18795833333333, 0.655928571428571, 2.009, 
1.36198275862069, 2.61165384615385, 0.873296296296296, 0.596, 
0.485884615384615, 1.13633333333333, 0.684461538461538, 1.30946153846154, 
1.69747222222222, 1.64197058823529, 0.40740625, 1.40716666666667, 
0.641625, 0.428576923076923, 0.729011904761905, 0.376222222222222, 
1.52984615384615, 1.15317647058824, 1.66183333333333, 1.17904166666667, 
0.604857142857143, 1.57425, 1.55772222222222, 0.7315, 0.119, 
1.125875), SampDepth = c(27L, 18L, 13L, 12L, 13L, 13L, 18L, 17L, 
32L, 12L, 12L, 13L, 14L, 18L, 13L, 17L, 12L, 12L, 14L, 14L, 29L, 
21L, 13L, 13L, 27L, 18L, 13L, 12L, 13L, 13L, 18L, 17L, 32L, 12L, 
12L, 13L, 14L, 18L, 13L, 17L, 12L, 12L, 14L, 14L, 29L, 13L, 27L, 
18L, 13L, 12L, 13L, 13L, 18L, 17L, 32L, 12L, 12L, 13L, 14L, 18L, 
13L, 17L, 12L, 12L, 14L, 4L, 9L, 2L, 1L, 8L)), .Names = c("Year", 
"plot", "AvgRW", "SampDepth"), row.names = 2330:2399, class = "data.frame")

当前代码(在没有"xx“、"yy”和“多边形”行的情况下工作正常)：

for (i in df6$plot) {                      #start loop
  png(filename = paste0("C:\\Users\\User\\Desktop\\", i, type="png")) #saves graphs
  par(mar=c(5.1,4.1,4.1,5.1))             #increase right margin
  xx <- c(df6[df6$plot==i, min(df6$Year)], x, df6[df6$plot==i, max(df6$Year)])
  yy <- c(df6[df6$plot==i, min(df6$SampDepth)], y, df6[df6$plot==i, max(df6$SampDepth)])
  polygon(xx, yy, col="gray")
  plot(df6[df6$plot==i,c(1,3)],xaxt="n", type="l", ylab="Avg RW")
  title(main=i,line=2.5)                  #add title
  axis(1,at=as.integer(df6$Year),labels=df6$Year) #bottom axis
  axis(3,at=as.integer(df6$Year),labels=df6$Year) #top axis
  par(new = TRUE)                                 #overlay for secondary y
  plot(df6[df6$plot==i,c(1,4)],xaxt="n",yaxt="n", ylab="",type="l", col="red")
  axis(4)                                         #add secondary y axis
  mtext("Sample Depth", side = 4, line=2)         #add secondary y label
  dev.off()
}

在使用这段代码时，我一直收到一个错误消息，我的x和y长度不同。

Answer 1

你的问题源于你试图绘制多边形的方式。画一个多边形实际上比你想要画的要简单得多。此外，我还列出了要处理的数据，因为这样可以更容易地发现错误(对我来说)。如果您想回到您的内联子设置，这将是好的，因为这只是一个功能的例子，向您展示如何使用polygon()。

对于曲线下区域的颜色，我建议检查一下rgb()，它允许您指定一个alpha值，以避免冲掉图表的其余部分。

干杯!

 for (i in df6$plot) {                      #start loop
      ## Cut out the data you are working with
      plotting <- df6[which(df6$plot == i),]

  ## Begin plotting
  png(filename = paste0("C:\\Users\\User\\Desktop\\", i, type="png")) #saves graphs  
  par(mar=c(5.1,4.1,4.1,5.1))             #increase right margin
  plot(plotting[,c(1,3)],xaxt="n", type="l", ylab="Avg RW")

  ## This is what I added
  # This will tell R how to plot the polygon, it need the x values (years) ascending and descending
  # And it needs y values (AvgRW) for the above 0 values as well as the 0 values.
  xx <- c(unique(plotting$Year),rev(unique(plotting$Year)))
  yy <- c(plotting$AvgRW,rep(0,length(unique(plotting$Year))))

  polygon(xx, yy, col="gray")
  title(main=i,line=2.5)                  #add title
  axis(1,at=as.integer(plotting$Year),labels=plotting$Year) #bottom axis
  axis(3,at=as.integer(plotting$Year),labels=plotting$Year) #top axis
  par(new = TRUE)                                 #overlay for secondary y
  plot(plotting[,c(1,4)],xaxt="n",yaxt="n", ylab="",type="l", col="red")
  axis(4)                                         #add secondary y axis
  mtext("Sample Depth", side = 4, line=2)         #add secondary y label
  dev.off()
}