EMR上的烫伤: Hadoop作业在NoSuchMethodError: NoSuchMethodError中失败

Question

基本上我需要在电子病历上做一份烫伤的工作。在我的macbook上的本地hadoop上，同样的工作运行得非常好，但是在EMR上的Hadoop上却失败了。

在级联用户组和scala用户组中，我也在努力寻求对此问题的帮助，但一直未能获得帮助。到目前为止，在过去的几天里，我尝试了各种不同的改变，但没有取得多大的进展。

在深入研究细节之前，这里有一个错误：

线程"main“java.lang.NoSuchMethodError: java.lang.NoSuchMethodError中的异常com.aggregation.job.DataAggregation$.(DataAggregation.scala:30) at com.aggregation.job.DataAggregation$.(DataAggregation.scala) at com.aggregation.job.DataAggregation.main(DataAggregation.scala) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(方法)org.apache.hadoop.util.RunJar.main(RunJar.java:212) ( .java:606)

他们说这可能是scala与二进制文件的冲突，但我看不到任何明显的东西。如果有人能帮我弄清楚，那就太好了。

环境：

Amazon : 3.8.0 (包括Scala2.11.1、Hadoop2.4.0、Java 1.7.0_76 - AMI详情)

应用环境:烫伤0.15.0，Scala2.11.1，Java 1.7.0_80，Hadoop2.4.0

我尝试过对配置进行各种更改，甚至在EMR中手动安装了更高的scala版本，但到目前为止，错误并没有消失。

请帮帮我！谢谢。

我

设置

build.sbt：

scalaVersion := "2.11.1"

ivyScala := ivyScala.value map {
  _.copy(overrideScalaVersion = true)
}

dependencies.sbt：

import AssemblyKeys._

val hadoopVersion = "2.4.0"

val scaldingVersion = "0.15.0"

libraryDependencies ++= Seq(
  "com.twitter" %% "scalding-core" % scaldingVersion,
  "com.twitter" %% "scalding-json" % scaldingVersion,
  "com.twitter" %% "scalding-jdbc" % scaldingVersion,
  "com.github.nscala-time" %% "nscala-time" % "2.0.0",
  "org.apache.hadoop" % "hadoop-common" % hadoopVersion % "provided",
  "org.apache.hadoop" % "hadoop-mapreduce-client-core" % hadoopVersion % "provided"
)

excludedJars in assembly <<= (fullClasspath in assembly) map { cp =>
  val excludes = Set(
  "jsp-api-2.1-6.1.14.jar",
  "jsp-2.1-6.1.14.jar",
  "jasper-compiler-5.5.12.jar",
  "minlog-1.2.jar", // Otherwise causes conflicts with Kyro (which bundles it)
  "janino-2.5.16.jar", // Janino includes a broken signature, and is not needed anyway
  "commons-beanutils-core-1.8.0.jar", // Clash with each other and with commons-collections
  "commons-beanutils-1.7.0.jar", // "
  "hadoop-core-1.2.1.jar", // Provided by Amazon EMR. Delete this line if you're not on EMR
  "hadoop-tools-1.2.1.jar" // "
)
cp filter { jar => excludes(jar.data.getName) }
}

resolvers ++= Seq(
  "Conjars repo" at "http://conjars.org/repo"
)

assembly.sbt

import AssemblyKeys._

assemblySettings

mergeStrategy in assembly := Merge.mergeStrategy

项目/建筑.属性：

sbt.version=0.13.1

项目/组装。

addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "0.11.0")

最后，这是一个依赖树，它使用依赖关系图插件来查看我是否有正确的版本。对不起，这是相当长的时间，如果我应该以其他方式显示这些信息，请推荐建议。

sbt依赖树：

[info] com.abc.aggregator_2.11:0.1-20150628T184441 [S]
[info]   +-com.github.nscala-time:nscala-time_2.11:2.0.0 [S]
[info]   | +-joda-time:joda-time:2.7
[info]   | +-org.joda:joda-convert:1.2
[info]   | 
[info]   +-com.twitter:scalding-core_2.11:0.15.0 [S]
[info]   | +-cascading:cascading-core:2.6.1
[info]   | | +-org.codehaus.janino:janino:2.7.5
[info]   | | | +-org.codehaus.janino:commons-compiler:2.7.5
[info]   | | | 
[info]   | | +-riffle:riffle:0.1-dev
[info]   | | +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]   | | 
[info]   | +-cascading:cascading-hadoop:2.6.1
[info]   | | +-cascading:cascading-core:2.6.1
[info]   | |   +-org.codehaus.janino:janino:2.7.5
[info]   | |   | +-org.codehaus.janino:commons-compiler:2.7.5
[info]   | |   | 
[info]   | |   +-riffle:riffle:0.1-dev
[info]   | |   +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]   | |   
[info]   | +-cascading:cascading-local:2.6.1
[info]   | | +-cascading:cascading-core:2.6.1
[info]   | | | +-org.codehaus.janino:janino:2.7.5
[info]   | | | | +-org.codehaus.janino:commons-compiler:2.7.5
[info]   | | | | 
[info]   | | | +-riffle:riffle:0.1-dev
[info]   | | | +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]   | | | 
[info]   | | +-com.google.guava:guava:14.0.1 (evicted by: 15.0)
[info]   | | +-com.google.guava:guava:15.0
[info]   | | +-org.slf4j:slf4j-api:1.6.6
[info]   | | +-org.slf4j:slf4j-api:1.7.2 (evicted by: 1.6.6)
[info]   | | 
[info]   | +-com.twitter:algebird-core_2.11:0.10.1 [S]
[info]   | | +-com.googlecode.javaewah:JavaEWAH:0.6.6
[info]   | | 
[info]   | +-com.twitter:bijection-core_2.11:0.8.0 [S]
[info]   | +-com.twitter:chill-algebird_2.11:0.6.0 [S]
[info]   | | +-com.esotericsoftware.kryo:kryo:2.21
[info]   | | | +-com.esotericsoftware.minlog:minlog:1.2
[info]   | | | +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   | | | | +-org.ow2.asm:asm:4.0
[info]   | | | | 
[info]   | | | +-org.objenesis:objenesis:1.2
[info]   | | | 
[info]   | | +-com.twitter:algebird-core_2.11:0.10.0 (evicted by: 0.10.1)
[info]   | | +-com.twitter:algebird-core_2.11:0.10.1 [S]
[info]   | | | +-com.googlecode.javaewah:JavaEWAH:0.6.6
[info]   | | | 
[info]   | | +-com.twitter:chill_2.11:0.6.0 [S]
[info]   | |   +-com.esotericsoftware.kryo:kryo:2.21
[info]   | |   | +-com.esotericsoftware.minlog:minlog:1.2
[info]   | |   | +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   | |   | | +-org.ow2.asm:asm:4.0
[info]   | |   | | 
[info]   | |   | +-org.objenesis:objenesis:1.2
[info]   | |   | 
[info]   | |   +-com.twitter:chill-java:0.6.0
[info]   | |     +-com.esotericsoftware.kryo:kryo:2.21
[info]   | |       +-com.esotericsoftware.minlog:minlog:1.2
[info]   | |       +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   | |       | +-org.ow2.asm:asm:4.0
[info]   | |       | 
[info]   | |       +-org.objenesis:objenesis:1.2
[info]   | |       
[info]   | +-com.twitter:chill-hadoop:0.6.0
[info]   | | +-com.esotericsoftware.kryo:kryo:2.21
[info]   | | | +-com.esotericsoftware.minlog:minlog:1.2
[info]   | | | +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   | | | | +-org.ow2.asm:asm:4.0
[info]   | | | | 
[info]   | | | +-org.objenesis:objenesis:1.2
[info]   | | | 
[info]   | | +-com.twitter:chill-java:0.6.0
[info]   | | | +-com.esotericsoftware.kryo:kryo:2.21
[info]   | | |   +-com.esotericsoftware.minlog:minlog:1.2
[info]   | | |   +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   | | |   | +-org.ow2.asm:asm:4.0
[info]   | | |   | 
[info]   | | |   +-org.objenesis:objenesis:1.2
[info]   | | |   
[info]   | | +-org.slf4j:slf4j-api:1.6.6
[info]   | | 
[info]   | +-com.twitter:chill-java:0.6.0
[info]   | | +-com.esotericsoftware.kryo:kryo:2.21
[info]   | |   +-com.esotericsoftware.minlog:minlog:1.2
[info]   | |   +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   | |   | +-org.ow2.asm:asm:4.0
[info]   | |   | 
[info]   | |   +-org.objenesis:objenesis:1.2
[info]   | |   
[info]   | +-com.twitter:chill_2.11:0.6.0 [S]
[info]   | | +-com.esotericsoftware.kryo:kryo:2.21
[info]   | | | +-com.esotericsoftware.minlog:minlog:1.2
[info]   | | | +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   | | | | +-org.ow2.asm:asm:4.0
[info]   | | | | 
[info]   | | | +-org.objenesis:objenesis:1.2
[info]   | | | 
[info]   | | +-com.twitter:chill-java:0.6.0
[info]   | |   +-com.esotericsoftware.kryo:kryo:2.21
[info]   | |     +-com.esotericsoftware.minlog:minlog:1.2
[info]   | |     +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   | |     | +-org.ow2.asm:asm:4.0
[info]   | |     | 
[info]   | |     +-org.objenesis:objenesis:1.2
[info]   | |     
[info]   | +-com.twitter:maple:0.15.0
[info]   | | +-cascading:cascading-hadoop:2.6.1
[info]   | |   +-cascading:cascading-core:2.6.1
[info]   | |     +-org.codehaus.janino:janino:2.7.5
[info]   | |     | +-org.codehaus.janino:commons-compiler:2.7.5
[info]   | |     | 
[info]   | |     +-riffle:riffle:0.1-dev
[info]   | |     +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]   | |     
[info]   | +-com.twitter:scalding-args_2.11:0.15.0 [S]
[info]   | +-com.twitter:scalding-date_2.11:0.15.0 [S]
[info]   | +-com.twitter:scalding-serialization_2.11:0.15.0 [S]
[info]   | +-org.slf4j:slf4j-api:1.6.6
[info]   | 
[info]   +-com.twitter:scalding-jdbc_2.11:0.15.0 [S]
[info]   | +-cascading:cascading-jdbc-core:2.6.0
[info]   | | +-com.google.guava:guava:15.0
[info]   | | 
[info]   | +-cascading:cascading-jdbc-mysql:2.6.0
[info]   | | +-cascading:cascading-jdbc-core:2.6.0
[info]   | | | +-com.google.guava:guava:15.0
[info]   | | | 
[info]   | | +-com.google.guava:guava:15.0
[info]   | | +-mysql:mysql-connector-java:5.1.25
[info]   | | 
[info]   | +-com.twitter:scalding-core_2.11:0.15.0 [S]
[info]   |   +-cascading:cascading-core:2.6.1
[info]   |   | +-org.codehaus.janino:janino:2.7.5
[info]   |   | | +-org.codehaus.janino:commons-compiler:2.7.5
[info]   |   | | 
[info]   |   | +-riffle:riffle:0.1-dev
[info]   |   | +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]   |   | 
[info]   |   +-cascading:cascading-hadoop:2.6.1
[info]   |   | +-cascading:cascading-core:2.6.1
[info]   |   |   +-org.codehaus.janino:janino:2.7.5
[info]   |   |   | +-org.codehaus.janino:commons-compiler:2.7.5
[info]   |   |   | 
[info]   |   |   +-riffle:riffle:0.1-dev
[info]   |   |   +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]   |   |   
[info]   |   +-cascading:cascading-local:2.6.1
[info]   |   | +-cascading:cascading-core:2.6.1
[info]   |   | | +-org.codehaus.janino:janino:2.7.5
[info]   |   | | | +-org.codehaus.janino:commons-compiler:2.7.5
[info]   |   | | | 
[info]   |   | | +-riffle:riffle:0.1-dev
[info]   |   | | +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]   |   | | 
[info]   |   | +-com.google.guava:guava:14.0.1 (evicted by: 15.0)
[info]   |   | +-com.google.guava:guava:15.0
[info]   |   | +-org.slf4j:slf4j-api:1.6.6
[info]   |   | +-org.slf4j:slf4j-api:1.7.2 (evicted by: 1.6.6)
[info]   |   | 
[info]   |   +-com.twitter:algebird-core_2.11:0.10.1 [S]
[info]   |   | +-com.googlecode.javaewah:JavaEWAH:0.6.6
[info]   |   | 
[info]   |   +-com.twitter:bijection-core_2.11:0.8.0 [S]
[info]   |   +-com.twitter:chill-algebird_2.11:0.6.0 [S]
[info]   |   | +-com.esotericsoftware.kryo:kryo:2.21
[info]   |   | | +-com.esotericsoftware.minlog:minlog:1.2
[info]   |   | | +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   |   | | | +-org.ow2.asm:asm:4.0
[info]   |   | | | 
[info]   |   | | +-org.objenesis:objenesis:1.2
[info]   |   | | 
[info]   |   | +-com.twitter:algebird-core_2.11:0.10.0 (evicted by: 0.10.1)
[info]   |   | +-com.twitter:algebird-core_2.11:0.10.1 [S]
[info]   |   | | +-com.googlecode.javaewah:JavaEWAH:0.6.6
[info]   |   | | 
[info]   |   | +-com.twitter:chill_2.11:0.6.0 [S]
[info]   |   |   +-com.esotericsoftware.kryo:kryo:2.21
[info]   |   |   | +-com.esotericsoftware.minlog:minlog:1.2
[info]   |   |   | +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   |   |   | | +-org.ow2.asm:asm:4.0
[info]   |   |   | | 
[info]   |   |   | +-org.objenesis:objenesis:1.2
[info]   |   |   | 
[info]   |   |   +-com.twitter:chill-java:0.6.0
[info]   |   |     +-com.esotericsoftware.kryo:kryo:2.21
[info]   |   |       +-com.esotericsoftware.minlog:minlog:1.2
[info]   |   |       +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   |   |       | +-org.ow2.asm:asm:4.0
[info]   |   |       | 
[info]   |   |       +-org.objenesis:objenesis:1.2
[info]   |   |       
[info]   |   +-com.twitter:chill-hadoop:0.6.0
[info]   |   | +-com.esotericsoftware.kryo:kryo:2.21
[info]   |   | | +-com.esotericsoftware.minlog:minlog:1.2
[info]   |   | | +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   |   | | | +-org.ow2.asm:asm:4.0
[info]   |   | | | 
[info]   |   | | +-org.objenesis:objenesis:1.2
[info]   |   | | 
[info]   |   | +-com.twitter:chill-java:0.6.0
[info]   |   | | +-com.esotericsoftware.kryo:kryo:2.21
[info]   |   | |   +-com.esotericsoftware.minlog:minlog:1.2
[info]   |   | |   +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   |   | |   | +-org.ow2.asm:asm:4.0
[info]   |   | |   | 
[info]   |   | |   +-org.objenesis:objenesis:1.2
[info]   |   | |   
[info]   |   | +-org.slf4j:slf4j-api:1.6.6
[info]   |   | 
[info]   |   +-com.twitter:chill-java:0.6.0
[info]   |   | +-com.esotericsoftware.kryo:kryo:2.21
[info]   |   |   +-com.esotericsoftware.minlog:minlog:1.2
[info]   |   |   +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   |   |   | +-org.ow2.asm:asm:4.0
[info]   |   |   | 
[info]   |   |   +-org.objenesis:objenesis:1.2
[info]   |   |   
[info]   |   +-com.twitter:chill_2.11:0.6.0 [S]
[info]   |   | +-com.esotericsoftware.kryo:kryo:2.21
[info]   |   | | +-com.esotericsoftware.minlog:minlog:1.2
[info]   |   | | +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   |   | | | +-org.ow2.asm:asm:4.0
[info]   |   | | | 
[info]   |   | | +-org.objenesis:objenesis:1.2
[info]   |   | | 
[info]   |   | +-com.twitter:chill-java:0.6.0
[info]   |   |   +-com.esotericsoftware.kryo:kryo:2.21
[info]   |   |     +-com.esotericsoftware.minlog:minlog:1.2
[info]   |   |     +-com.esotericsoftware.reflectasm:reflectasm:1.07
[info]   |   |     | +-org.ow2.asm:asm:4.0
[info]   |   |     | 
[info]   |   |     +-org.objenesis:objenesis:1.2
[info]   |   |     
[info]   |   +-com.twitter:maple:0.15.0
[info]   |   | +-cascading:cascading-hadoop:2.6.1
[info]   |   |   +-cascading:cascading-core:2.6.1
[info]   |   |     +-org.codehaus.janino:janino:2.7.5
[info]   |   |     | +-org.codehaus.janino:commons-compiler:2.7.5
[info]   |   |     | 
[info]   |   |     +-riffle:riffle:0.1-dev
[info]   |   |     +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]   |   |     
[info]   |   +-com.twitter:scalding-args_2.11:0.15.0 [S]
[info]   |   +-com.twitter:scalding-date_2.11:0.15.0 [S]
[info]   |   +-com.twitter:scalding-serialization_2.11:0.15.0 [S]
[info]   |   +-org.slf4j:slf4j-api:1.6.6
[info]   |   
[info]   +-com.twitter:scalding-json_2.11:0.15.0 [S]
[info]     +-com.fasterxml.jackson.module:jackson-module-scala_2.11:2.4.2 [S]
[info]     | +-com.fasterxml.jackson.core:jackson-annotations:2.4.2
[info]     | +-com.fasterxml.jackson.core:jackson-core:2.4.2
[info]     | +-com.fasterxml.jackson.core:jackson-databind:2.4.2
[info]     | | +-com.fasterxml.jackson.core:jackson-annotations:2.4.0 (evicted by: 2.4.2)
[info]     | | +-com.fasterxml.jackson.core:jackson-annotations:2.4.2
[info]     | | +-com.fasterxml.jackson.core:jackson-core:2.4.2
[info]     | | 
[info]     | +-com.google.code.findbugs:jsr305:2.0.1
[info]     | +-com.google.guava:guava:15.0
[info]     | +-com.thoughtworks.paranamer:paranamer:2.6
[info]     | +-org.scala-lang:scala-reflect:2.11.2 [S]
[info]     | 
[info]     +-com.twitter:scalding-core_2.11:0.15.0 [S]
[info]     | +-cascading:cascading-core:2.6.1
[info]     | | +-org.codehaus.janino:janino:2.7.5
[info]     | | | +-org.codehaus.janino:commons-compiler:2.7.5
[info]     | | | 
[info]     | | +-riffle:riffle:0.1-dev
[info]     | | +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]     | | 
[info]     | +-cascading:cascading-hadoop:2.6.1
[info]     | | +-cascading:cascading-core:2.6.1
[info]     | |   +-org.codehaus.janino:janino:2.7.5
[info]     | |   | +-org.codehaus.janino:commons-compiler:2.7.5
[info]     | |   | 
[info]     | |   +-riffle:riffle:0.1-dev
[info]     | |   +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]     | |   
[info]     | +-cascading:cascading-local:2.6.1
[info]     | | +-cascading:cascading-core:2.6.1
[info]     | | | +-org.codehaus.janino:janino:2.7.5
[info]     | | | | +-org.codehaus.janino:commons-compiler:2.7.5
[info]     | | | | 
[info]     | | | +-riffle:riffle:0.1-dev
[info]     | | | +-thirdparty:jgrapht-jdk1.6:0.8.1
[info]     | | | 
[info]     | | +-com.google.guava:guava:14.0.1 (evicted by: 15.0)
[info]     | | +-com.google.guava:guava:15.0
[info]     | | +-org.slf4j:slf4j-api:1.6.6
[info]     | | +-org.slf4j:slf4j-api:1.7.2 (evicted by: 1.6.6)
[info]     | | 
[info]     | +-com.twitter:algebird-core_2.11:0.10.1 [S]
[info]     | | +-com.googlecode.javaewah:JavaEWAH:0.6.6
[info]     | | 
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[success] Total time: 12 s, completed Jun 28, 2015 11:44:54 AM

应要求提供更多信息：

我使用'sbt程序集‘构建fat jar，目前我使用AWS控制台和一个“自定义JAR”步骤来测试这个步骤，然后再自动化这个过程。

JAR location: s3://path/to/jar/data-aggregator-0.1.jar
Arguments: com.abc.aggregation.job.DataAggregation --hdfs --input s3n://path/to/input/data/file.json --output s3n://path/to/input/data/file.txt

更新：

我能够通过提供指向Scala2.11.1 jars的HADOOP_CLASSPATH来克服上述错误，同时将其排除在sbt程序集步骤之外。这是在使用hadoop-user-env.sh时传递的，似乎适用于主节点。然而，一旦到了映射步骤，它就再次失败，因为另一个Scala错误。现在我被困在这一步了。

假设这是因为映射器和还原器没有看到HADOOP_CLASSPATH更新，我尝试包括指向hadoop本身上的scala文件的-libjars参数。但这个(下面)似乎不起作用。

 JAR location: s3://path/to/jar/data-aggregator-0.1.jar
Arguments: com.abc.aggregation.job.DataAggregation -libjars /usr/share/scala/lib/scala-library.jar,/usr/share/scala/lib/scala-reflect.jar --hdfs --input s3n://path/to/input/data/file.json --output s3n://path/to/input/data/file.txt

Answer 1

已修复。因此，EMR实例中确实存在多个scala jar，它们不是来自我的应用程序jar。

除了/usr/share/scala下2.11二进制文件的安装位置之外，2.10 jar隐藏在/usr/share/aws/emr/emrfs/lib中。因此，我在集群的所有实例中去掉了2.10 jar，我的工作成功地完成了。现在，我将为此创建一个引导操作。

$ sudo find / -name "scala-library-2.10.*.jar" -exec rm -rf {} \;

FYI，以下是其存在的途径：

[ec2-user@ip-172-31-72-130 ~]$ sudo find / -name "scala-library-2.11.*.jar"

/home/hadoop/.versions/hbase-0.94.18/lib/scala-library-2.11.0.jar
/usr/share/doc/scala/api/jars/scala-library-2.11.1-javadoc.jar

[ec2-user@ip-172-31-72-130 ~]$ sudo find / -name "scala-library-2.10.*.jar"

/usr/share/aws/emr/emrfs/lib/scala-library-2.10.5.jar

Answer 2

在经历了类似的问题之后……这显然是jar依赖项之间的版本不匹配。我首先登录到EMR主服务器，然后打开星火壳显示正在使用的scala版本，从而修复了它。现在，使用它在pom文件中配置您自己的依赖项，它应该可以工作。