R，biocLite，安装DESeq2错误

Question

几天来，我一直试图安装DESeq2来做一些分析。R和biocLite是最新的，当我尝试运行时会遇到权限错误

biocLite("DESeq2")

我收到的大多是好消息，但最后我得到了：

1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘XML’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘annotate’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘genefilter’ had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘geneplotter’ had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘DESeq2’ had non-zero exit status
>

我尝试过编辑权限，通过sudo运行R，并将我的用户添加到staff组中。

我不知所措，我还能做些什么来安装它呢？

谢谢

Answer 1

从日志来看，问题似乎源于XML包。如果XML库不可用，则libxml2包无法编译。要在Linux上安装它：

sudo apt-get install libxml2 
sudo apt-get install libxml2-dev

然后重新运行安装。