我的目标是从日晷2.7.0构建共享库--它们是用C语言编写的常微分方程的求解者。
我下载了源代码,并遵循了安装指南:
make && make install,我的共享库就生成了,完全没有错误消息。这是输出:$ make
Scanning dependencies of target sundials_nvecserial_shared
[ 3%] Building C object src/nvec_ser/CMakeFiles/sundials_nvecserial_shared.dir/nvector_serial.c.o
[ 7%] Building C object src/nvec_ser/CMakeFiles/sundials_nvecserial_shared.dir/__/sundials/sundials_math.c.o
[ 11%] Linking C shared library libsundials_nvecserial.so
[ 11%] Built target sundials_nvecserial_shared
Scanning dependencies of target sundials_cvode_shared
[ 14%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode.c.o
[ 18%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_io.c.o
[ 22%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_direct.c.o
[ 25%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_band.c.o
[ 29%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_dense.c.o
[ 33%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_diag.c.o
[ 37%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_spils.c.o
[ 40%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_spbcgs.c.o
[ 44%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_spgmr.c.o
[ 48%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_sptfqmr.c.o
[ 51%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_sparse.c.o
[ 55%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_bandpre.c.o
[ 59%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/cvode_bbdpre.c.o
[ 62%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_nvector.c.o
[ 66%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_math.c.o
[ 70%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_direct.c.o
[ 74%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_band.c.o
[ 77%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_dense.c.o
[ 81%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_iterative.c.o
[ 85%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_sparse.c.o
[ 88%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_spbcgs.c.o
[ 92%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_spgmr.c.o
[ 96%] Building C object src/cvode/CMakeFiles/sundials_cvode_shared.dir/__/sundials/sundials_sptfqmr.c.o
[100%] Linking C shared library libsundials_cvode.so
[100%] Built target sundials_cvode_shared
$ sudo make install
[ 11%] Built target sundials_nvecserial_shared
[100%] Built target sundials_cvode_shared
Install the project...
-- Install configuration: ""
-- Installing: /usr/local/include/sundials/sundials_config.h
Install shared components
-- Installing: /usr/local/include/sundials/sundials_band.h
-- Installing: /usr/local/include/sundials/sundials_dense.h
-- Installing: /usr/local/include/sundials/sundials_direct.h
-- Installing: /usr/local/include/sundials/sundials_iterative.h
-- Installing: /usr/local/include/sundials/sundials_math.h
-- Installing: /usr/local/include/sundials/sundials_nvector.h
-- Installing: /usr/local/include/sundials/sundials_fnvector.h
-- Installing: /usr/local/include/sundials/sundials_pcg.h
-- Installing: /usr/local/include/sundials/sundials_sparse.h
-- Installing: /usr/local/include/sundials/sundials_spbcgs.h
-- Installing: /usr/local/include/sundials/sundials_spfgmr.h
-- Installing: /usr/local/include/sundials/sundials_spgmr.h
-- Installing: /usr/local/include/sundials/sundials_sptfqmr.h
-- Installing: /usr/local/include/sundials/sundials_types.h
Install NVECTOR_SERIAL
-- Installing: /usr/local/lib/libsundials_nvecserial.so.2.7.0
-- Installing: /usr/local/lib/libsundials_nvecserial.so.2
-- Installing: /usr/local/lib/libsundials_nvecserial.so
-- Installing: /usr/local/include/nvector/nvector_serial.h
Install CVODE
-- Installing: /usr/local/lib/libsundials_cvode.so.2.9.0
-- Installing: /usr/local/lib/libsundials_cvode.so.2
-- Installing: /usr/local/lib/libsundials_cvode.so
-- Installing: /usr/local/include/cvode/cvode_band.h
-- Installing: /usr/local/include/cvode/cvode_bandpre.h
-- Installing: /usr/local/include/cvode/cvode_bbdpre.h
-- Installing: /usr/local/include/cvode/cvode_dense.h
-- Installing: /usr/local/include/cvode/cvode_diag.h
-- Installing: /usr/local/include/cvode/cvode_direct.h
-- Installing: /usr/local/include/cvode/cvode.h
-- Installing: /usr/local/include/cvode/cvode_sparse.h
-- Installing: /usr/local/include/cvode/cvode_spbcgs.h
-- Installing: /usr/local/include/cvode/cvode_spgmr.h
-- Installing: /usr/local/include/cvode/cvode_spils.h
-- Installing: /usr/local/include/cvode/cvode_sptfqmr.h
-- Installing: /usr/local/include/cvode/cvode_impl.h这些共享库似乎在我的项目中正常工作,我需要它们--常微分方程正在得到解,并且输出似乎与独立于它们的其他求解者相同。
,但是有一个很大的但是:):在生成的共享库中检查未定义的符号,向我展示标准函数的简短列表--以下是共享库的输出:
$ nm -D --undefined-only libsundials_cvode.so.2.9.0
w __cxa_finalize
U exp
U fprintf
U fputc
U free
U fwrite
w __gmon_start__
w _ITM_deregisterTMCloneTable
w _ITM_registerTMCloneTable
U malloc
U memset
U pow
U printf
U putchar
U realloc
U sqrt
U __stack_chk_fail
U stderr
U vsprintf和
$ nm -D --undefined-only libsundials_nvecserial.so.2.7.0
w __cxa_finalize
U exp
U free
w __gmon_start__
w _ITM_deregisterTMCloneTable
w _ITM_registerTMCloneTable
U malloc
U pow
U printf
U putchar
U sqrt打印共享库依赖关系提供:
$ ldd -r libsundials_nvecserial.so
linux-vdso.so.1 (0x00007ffd657a5000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fecd8155000)
/lib64/ld-linux-x86-64.so.2 (0x00007fecd874c000)
undefined symbol: exp (./libsundials_nvecserial.so)
undefined symbol: pow (./libsundials_nvecserial.so)
undefined symbol: sqrt (./libsundials_nvecserial.so)和
$ ldd -r libsundials_cvode.so linux-vdso.so.1 (0x00007ffe6a1ff000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f6cd55ac000)
/lib64/ld-linux-x86-64.so.2 (0x00007f6cd5bc8000)
undefined symbol: exp (./libsundials_cvode.so)
undefined symbol: pow (./libsundials_cvode.so)
undefined symbol: sqrt (./libsundials_cvode.so)例如,像SUNRsqrt这样的函数是在sqrt上定义的,在实际的数值计算中非常重要--这个事实以及未定义符号的存在使我对共享库的可靠性感到困惑和担忧。
在生成共享库之前,我已经为环境变量LD_LIBRARY_PATH设置了所有适当的路径(顺便说一句,它以前是空的):
$ export LD_LIBRARY_PATH="/usr/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/gcc/x86_64-linux-gnu"
$ echo $LD_LIBRARY_PATH
/usr/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/gcc/x86_64-linux-gnu例如,C标准库libc.so和C数学库libm.so存储在/usr/lib/x86_64-linux- GNU,而gnu事务内存库libitim.so存储在/usr/lib/gcc/x86_64-linux-gnu (尽管版本1.0.0也存储在/usr/lib/x86_64-linux-gnu)。
操作系统、Cmake、GNU C编译器和GNU Make的版本:
$ lsb_release -d
Description: Ubuntu 18.04.5 LTS
$ cmake --version
cmake version 3.18.2
$ gcc --version
gcc (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0
$ make --version
GNU Make 4.1如有任何意见,将不胜感激。
这个例子是完全可复制的,因为它都是关于从SUNDIALS 2.7.0源(直接下载连结)生成共享库,并检查它们的未定义符号。
发布于 2020-09-20 16:06:29
您在ldd中有未定义的符号,因为so文件是在没有-lm选项的情况下创建的。但是,只要最终的可执行文件与-lm选项相链接,就不会有问题。这就是对像test_nvector_serial这样的测试所做的工作,它与-lm -lrt相链接。
您可以通过使用make VERBOSE=1在详细模式下运行make来看到这一切。如果您尝试在不使用-lm的情况下生成可执行文件,那么collect2: error: ld returned 1 exit status和链接器将抱怨exp、pow和sqrt。如果在创建so文件时添加-lm (我做了)。你会看到:
ldd -r ./src/nvec_ser/libsundials_nvecserial.so
linux-vdso.so.1 (0x00007ffe1a769000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fe4a5c19000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fe4a5828000)
/lib64/ld-linux-x86-64.so.2 (0x00007fe4a61bd000)在这种情况下,您可以在不使用-lm的情况下链接您的测试(如果您愿意的话只为自己做一些测试)。
使用-lm编译so文件。您可以在输入正确的文件夹后(仅为测试目的)运行带有-lm选项的命令行。另一种方法是修改生成so文件的CMakeLists.txt。例如,对于libsundials_nvecserial.so,您可以通过在sundials-2.7.0/src/nvec_ser/CMakeLists.txt后面添加target_link_libraries(sundials_nvecserial_shared -lm)来修改ADD_LIBRARY(sundials_nvecserial_shared SHARED ${nvecserial_SOURCES} ${shared_SOURCES})。
对于LD_LIBRARY_PATH,如果您在标准位置查找,它不一定包含某些内容。链接器也使用/etc/ld.so.cache,并且搜索也在默认路径中,除非您使用-z nodeflib。您可以在https://man7.org/linux/man-pages/man8/ld.so.8.html中找到更多详细信息
对于nm -D。这是正常的,尝试编译一个hello gcc -o exec hello.c,您将看到printf是未定义的。查看一下动态链接,以及用于构建so文件的-rdynamic选项。
https://stackoverflow.com/questions/63979007
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