gene_ontology函数的未使用参数出错

Question

我试图在R中执行基因本体分析，我得到了这个错误；

Error in get_ontology(x, name = paste("Cluster", names(df.list[i]), "Pathways_for_kmeans_cluster",  : 
  unused argument (name = paste("Cluster", names(df.list[i]), "Pathways_for_kmeans_cluster", j, sep = "_"))

在我运行这个脚本之后：

numclus <- sort(unique(df.list[[i]]$kmeans.cluster))
subdirname <- paste("D:/Master jaar 1/RP1/RP1 projects/Aged macrophage characterisation/Single cell sequencing/nieuwe stuff", "/top100_genes_from_", names(df.list[i]), "_pathways_from_kmeans_clusters", sep = " ")
dir.create(subdirname, showWarnings = FALSE)
install.packages("ontologyPlot")


for (j in numclus){
   x <- data.frame(gene = rownames(df.list[[i]][which(df.list[[i]]$kmeans.cluster == j),]), avg_logFC = 0)}
   if(nrow(x)>10){
     get_ontology(x, name = paste("Cluster", names(df.list[i]), "Pathways_for_kmeans_cluster", j, sep = "_"), return.data = F, outdir = subdirname, full_GSEA = F)
   }
 }

我在使用get_ontology的行后得到错误

Answer 1

它告诉你，get_ontology没有一个叫做name的参数。您还没有告诉我们您正在使用哪些包，所以我不能进一步帮助您，但是您可以通过查看在线帮助来获得一些帮助。