Nipype列表：<>实例的“”in_file“”特性必须是现有的文件名，但指定的值为<>

Question

我正在尝试构建一个用于标准化/共同注册的工作流。这是我的DataGrabber

data_grabber = Node(interface=DataGrabber(infields=['subject_id'], 
                                      outfields=['t1', 'flair', 'les','ref']),
               name ='data_grabber')
data_grabber.inputs.base_directory = base_dir
data_grabber.inputs.template = '*'
data_grabber.inputs.sort_filelist = True
data_grabber.inputs.field_template = dict(t1='T1/%s_BL_T1.nii',
                                   flair='FLAIR/%s_BL_FLAIR.nii',
                                   les='Lesions/%s_BL_FLAIR*.nii',
                                    ref='/usr/share/data/fsl-mni152-templates/%s')
data_grabber.inputs.template_args = dict(t1=[['subject_id']],
                                   flair=[['subject_id']],
                                   les=[['subject_id']],
                                    ref=[['MNI152_T1_1mm.nii.gz']])

data_grabber.inputs.subject_id = [217, 221]

当我尝试只使用一个主题时，一切都没有问题，使用更多主题时，我收到以下错误。

TraitError: The 'in_file' trait of a FLIRTInputSpec instance must be an existing file name, but a value of ['/[...]/FLAIR/217_BL_FLAIR.nii', '/[...]/FLAIR/221_BL_FLAIR.nii'] <class 'list'> was specified.
Error setting node input:
Node: flair_norm
input: in_file
results_file: /[...]/data_grabber/result_data_grabber.pklz
value: ['/[...]/FLAIR/217_BL_FLAIR.nii', '/[...]/FLAIR/221_BL_FLAIR.nii']

Answer 1

DataGrabber仅接受单个in_file。您需要将DataGrabber放入MapNode中：

data_grabber = MapNode(
    interface = DataGrabber(
        infields = ['subject_id'],
        outfields = ['t1', 'flair', 'les','ref']
    ),
    iterfields = ['in_file'],
    name = 'data_grabber'
)