scipy智能优化

Question

我需要用直线拟合不同数据集中的一些点。从每个数据集中我想要拟合一条线。所以我得到了描述I线的参数ai和bi : ai + bi*x，问题是我想强制每个ai是相等的，因为我想要相同的截距。我在这里找到了一个教程：http://www.scipy.org/Cookbook/FittingData#head-a44b49d57cf0165300f765e8f1b011876776502f。不同的是，我不知道我有多少个数据集。我的代码是：

from numpy import *
from scipy import optimize

# here I have 3 dataset, but in general I don't know how many dataset are they
ypoints = [array([0, 2.1, 2.4]),    # first dataset, 3 points
           array([0.1, 2.1, 2.9]),  # second dataset
           array([-0.1, 1.4])]      # only 2 points

xpoints = [array([0, 2, 2.5]),      # first dataset
           array([0, 2, 3]),        # second, also x coordinates are different
           array([0, 1.5])]         # the first coordinate is always 0

fitfunc = lambda a, b, x: a + b * x
errfunc = lambda p, xs, ys: array([ yi - fitfunc(p[0], p[i+1], xi) 
                                    for i, (xi,yi) in enumerate(zip(xs, ys)) ])


p_arrays = [r_[0.]] * len(xpoints)
pinit = r_[[ypoints[0][0]] + p_arrays]
fit_parameters, success = optimize.leastsq(errfunc, pinit, args = (xpoints, ypoints))

我得到了

Traceback (most recent call last):
  File "prova.py", line 19, in <module>
    fit_parameters, success = optimize.leastsq(errfunc, pinit, args = (xpoints,    ypoints))
  File "/usr/lib64/python2.6/site-packages/scipy/optimize/minpack.py", line 266, in  leastsq
    m = check_func(func,x0,args,n)[0]
  File "/usr/lib64/python2.6/site-packages/scipy/optimize/minpack.py", line 12, in  check_func
    res = atleast_1d(thefunc(*((x0[:numinputs],)+args)))
  File "prova.py", line 14, in <lambda>
    for i, (xi,yi) in enumerate(zip(xs, ys)) ])
ValueError: setting an array element with a sequence.

Answer 1

如果您只需要线性拟合，那么最好使用线性回归来估计它，而不是使用非线性优化器。使用scikits.statsmodels可以获得更多的fit统计信息。

import numpy as np
from numpy import array

ypoints = np.r_[array([0, 2.1, 2.4]),    # first dataset, 3 points
           array([0.1, 2.1, 2.9]),  # second dataset
           array([-0.1, 1.4])]      # only 2 points

xpoints = [array([0, 2, 2.5]),      # first dataset
           array([0, 2, 3]),        # second, also x coordinates are different
           array([0, 1.5])]         # the first coordinate is always 0

xp = np.hstack(xpoints)
indicator = []
for i,a in enumerate(xpoints):
    indicator.extend([i]*len(a))

indicator = np.array(indicator)


x = xp[:,None]*(indicator[:,None]==np.arange(3)).astype(int)
x = np.hstack((np.ones((xp.shape[0],1)),x))

print np.dot(np.linalg.pinv(x), ypoints)
# [ 0.01947973  0.98656987  0.98481549  0.92034684]

回归矩阵具有共同的截距，但每个数据集具有不同的列：

>>> x
array([[ 1. ,  0. ,  0. ,  0. ],
       [ 1. ,  2. ,  0. ,  0. ],
       [ 1. ,  2.5,  0. ,  0. ],
       [ 1. ,  0. ,  0. ,  0. ],
       [ 1. ,  0. ,  2. ,  0. ],
       [ 1. ,  0. ,  3. ,  0. ],
       [ 1. ,  0. ,  0. ,  0. ],
       [ 1. ,  0. ,  0. ,  1.5]])

Answer 2

(附注:使用def，而不是分配给名称的lambda --这非常愚蠢，而且只有缺点，lambda唯一的用途是使匿名函数！)。

您的errfunc应该返回一个浮点数序列(数组或其他数组)，但事实并非如此，因为您试图将每个y点的差值数组作为数组的项(记住，ypoints又名ys是一个数组列表！)以及拟合函数的结果。因此，您需要将表达式yi - fitfunc(p[0], p[i+1], xi)“折叠”为一个浮点数，例如norm(yi - fitfunc(p[0], p[i+1], xi))。