安装RMySQL时出错(Ubuntu13.04中的MySQL 5.6.14 )

Question

当我使用MySQL v5.6.14时，我正在尝试在Ubuntu13.04中安装RMySQL。Ubuntu没有对MySQL 5.6.14的apt-get支持，所以我不得不手动安装它。现在，当我尝试安装RMySQL时，我得到以下信息：

(看起来没有创建包文件？但我不确定为什么或如何调试它。)

elad@elad-ThinkPad-T430s:~/tmp$ sudo R CMD INSTALL --configure-args='--with-mysql-inc=/opt/mysql/server-5.6/include --with-mysql-lib=/opt/mysql/server-5.6/lib' RMySQL_0.9-3.tar.gz 
* installing to library ‘/usr/local/lib/R/site-library’
* installing *source* package ‘RMySQL’ ...
** package ‘RMySQL’ successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for compress in -lz... yes
checking for getopt_long in -lc... yes
checking for mysql_init in -lmysqlclient... no
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking mysql.h usability... no
checking mysql.h presence... no
checking for mysql.h... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/opt/mysql/server-5.6/include     -fpic  -O2 -pipe -g  -c RS-DBI.c -o RS-DBI.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/opt/mysql/server-5.6/include     -fpic  -O2 -pipe -g  -c RS-MySQL.c -o RS-MySQL.o
gcc -std=gnu99 -shared -o RMySQL.so RS-DBI.o RS-MySQL.o -L/opt/mysql/server-5.6/lib -lmysqlclient -lz -L/usr/lib/R/lib -lR
installing to /usr/local/lib/R/site-library/RMySQL/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘format’ from package ‘base’ in package ‘RMySQL’
Creating a generic function for ‘print’ from package ‘base’ in package ‘RMySQL’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error : .onLoad failed in loadNamespace() for 'RMySQL', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/usr/local/lib/R/site-library/RMySQL/libs/RMySQL.so':
  libmysqlclient.so.18: cannot open shared object file: No such file or directory
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/usr/local/lib/R/site-library/RMySQL’
* restoring previous ‘/usr/local/lib/R/site-library/RMySQL’

更新：

这最终成为了一个LD_LIBRARY_PATH问题。将以下内容添加到/usr/bin/R解决了这个问题：

LD_LIBRARY_PATH=$LD_LIBRARY_PATH/opt/mysql/server-5.6/lib
export LD_LIBRARY_PATH

Answer 1

在本地安装库之后，您是否运行了ldconfig？

ldconfig -p会返回一些关于mysql的信息吗？

在我的机器上，手动包装了来自Ubuntu行的默认MySQL库

edd@max:~$ ldconfig -p | grep mysql
        libmysqlclient.so.18 (libc6,x86-64) => \
               /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18
        libmysqlclient.so (libc6,x86-64) => \
               /usr/lib/x86_64-linux-gnu/libmysqlclient.so
edd@max:~$